View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_1 (Length: 1043)
Name: NF18068_low_1
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 469 - 1035
Target Start/End: Original strand, 26418559 - 26419122
Alignment:
| Q |
469 |
caaaaaactacatcactcacaaattatactagtttctgagagagtgtgaataagaagaagggaaaggaggaaaatatctgaaagagaaagcccataacga |
568 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26418559 |
caaaaaactacatcactcccaaattatactagtttctgagagagtgtgaataagaag---ggaaaggaggaaaatatctgaaagagaaagcccataacga |
26418655 |
T |
|
| Q |
569 |
agattctcttttaaaaaa-gcccataacaaatacagttaacccatggtaatattctgacacaacagtaaccgcagttaacacctcggaaaaaggatcaaa |
667 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26418656 |
agattctcttttaaaaaaagcccataacaaatgcagttaaccc-tggtaatattctgacacaacagtaaccgcagttaacacctcggaaaaaggatcaaa |
26418754 |
T |
|
| Q |
668 |
aatatcttcgtgcatcatttacaatcttaaccccaccaattaacccattcccatctatatataactccaccttcttcagtacaaaatcacaaaatatctt |
767 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26418755 |
aatatcttcgtgcatcatttacaatcttaaccccaccaattaacccattcccatctatatataactccaccttcttcagtacaaaatcacaaaatatctt |
26418854 |
T |
|
| Q |
768 |
atcttctaatctttttactgtcaaatctagggttttagttttttccatcaatggcttctgcagatgttgaataccgttgcttcgttggaggtcttgcatg |
867 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26418855 |
atcttctaatctttttactgtaaaatctagggttttagttttttccatcaatggcttctgcagatgttgaataccgttgcttcgtcggaggtcttgcatg |
26418954 |
T |
|
| Q |
868 |
ggccaccgatagcgaagctctcgagaaagccttctctcaatatggagaaatcatcgattcgaaggtctgtttgttgcttacaggcttcggatcggatctg |
967 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26418955 |
ggccaccgatagcgaagctctcgagaaagccttctctcaatatggagaaatcatcgattcgaaggtctgtttgttgcttacaggcttcggatcggatctg |
26419054 |
T |
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| Q |
968 |
acacgattttgattcggatttctcatgaaacctttctgatctgtgatctccgatctgttctgttctgt |
1035 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26419055 |
acacgattttgattcggatttctcatgaaacctttctgatctgtgatctccgatctgttctgttctgt |
26419122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 170 - 471
Target Start/End: Original strand, 26418226 - 26418526
Alignment:
| Q |
170 |
ggttaattctatcacaaaatttattacattttatagtccaaggtggatcaccaacctatatttcctatgggagatatgatatcaacgaaattacttgcta |
269 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26418226 |
ggttaattctatcacaaaaattattacattttatagtcaaaggtggatcaccaacctatatttcctatgggagatatgatatcaacgaaattacttgcta |
26418325 |
T |
|
| Q |
270 |
gaattgtcactctccttgaatttatctctaatgcctataagatctctatactcaacaattaccttcattaggactatataatagataggacattaggact |
369 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
26418326 |
gaattgtgactctccttgaatttatctctaatgcctataagatcactatactcaacaattatcttcattaggac--tataatagataggacattaggact |
26418423 |
T |
|
| Q |
370 |
aaataatcaaacctcaccattagtcatctcaattctaaaattgatgaattgta-nnnnnnnnataagggtagtaatacttgccatgtcaaagcttccatg |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26418424 |
aaataatcaaacctcaccattagtcatctcaattctaaaattgatgaattgtatttttttttataagggtagtaatacttgccatgtcaaagcttccatg |
26418523 |
T |
|
| Q |
469 |
caa |
471 |
Q |
| |
|
||| |
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|
| T |
26418524 |
caa |
26418526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 830 - 1030
Target Start/End: Original strand, 26374616 - 26374816
Alignment:
| Q |
830 |
gatgttgaataccgttgcttcgttggaggtcttgcatgggccaccgatagcgaagctctcgagaaagccttctctcaatatggagaaatcatcgattcga |
929 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || || ||| | ||||| | |
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| T |
26374616 |
gatgttgaataccggtgcttcgtcggaggtcttgcatgggccaccgacaacgaagctctcgagaaagccttctctcaatacggcgagatcgttgattcca |
26374715 |
T |
|
| Q |
930 |
aggtctgtttgttgcttacaggcttcggatcggatctgacacgattttgattcggatttctcatgaaacctttctgatctgtgatctccgatctgttctg |
1029 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26374716 |
aggtccgtttgttgcttgcaggcttcggatcggatctgacacgattttgattcggatttctatggaaacctttctgatctgtgatctccgatctgttctg |
26374815 |
T |
|
| Q |
1030 |
t |
1030 |
Q |
| |
|
| |
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|
| T |
26374816 |
t |
26374816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 26418062 - 26418198
Alignment:
| Q |
17 |
aaaaatgctttgtgaagctacgctatttttctaatttcggaagaacctaaacaaatgcttttgagtagggtaatatccacttcctataacaaaaagtttt |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26418062 |
aaaaatgttttgtgaagctacgctatttttctaatttcggaagaacctaaacaaatgcttttgagtagggtaatatccacttcctataacaaaaagtttt |
26418161 |
T |
|
| Q |
117 |
gttaagcctttcaaaaattaattttatcacttctctc |
153 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||| |
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| T |
26418162 |
gttaagcctttcaaaagttaattctatcacttctctc |
26418198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 830 - 934
Target Start/End: Original strand, 26401684 - 26401788
Alignment:
| Q |
830 |
gatgttgaataccgttgcttcgttggaggtcttgcatgggccaccgatagcgaagctctcgagaaagccttctctcaatatggagaaatcatcgattcga |
929 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||| | | ||| ||||||| ||||| | |
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| T |
26401684 |
gatgttgagtaccgttgcttcgtcggaggtcttgcatgggccaccgatagccaagctctcgagcaagctttctctaagtttggtgaaatcactgattcca |
26401783 |
T |
|
| Q |
930 |
aggtc |
934 |
Q |
| |
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||||| |
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|
| T |
26401784 |
aggtc |
26401788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 756 - 826
Target Start/End: Complemental strand, 31909111 - 31909042
Alignment:
| Q |
756 |
acaaaatatcttatcttctaatctttttactgtcaaatctagggttttagttttttccatcaatggcttct |
826 |
Q |
| |
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||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| |
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| T |
31909111 |
acaaaatattttatcttctaatctttttactataaaatctagggttttagtttttt-catcaatggcttct |
31909042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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