View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_101 (Length: 251)
Name: NF18068_low_101
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28296943 - 28297178
Alignment:
| Q |
1 |
ccttagtttcttccacaaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaag |
100 |
Q |
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| T |
28296943 |
ccttagtttcttccataaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaag |
28297042 |
T |
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| Q |
101 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28297043 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
28297142 |
T |
|
| Q |
201 |
tttgtgagagttttgtgagtgccttatgtgggtttt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28297143 |
tttgtgagagttttgtgagtgccttatgtgggtttt |
28297178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28288270 - 28288035
Alignment:
| Q |
1 |
ccttagtttcttccacaaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| | ||||||||| ||||||||||| |||||| |
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| T |
28288270 |
ccttagtttcttccacaaagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtattgcatgtgggacagttctatttgagaag |
28288171 |
T |
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| Q |
101 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
200 |
Q |
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| T |
28288170 |
atttgagaattttcatgtaaaacttgtttggctaattgtggtgatgaaattactatggttgttaatgttcctagttttagtgtcataattggtccataga |
28288071 |
T |
|
| Q |
201 |
tttgtgagagttttgtgagtgccttatgtgggtttt |
236 |
Q |
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| | |||||| |||||||||| | | |||||||||| |
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| T |
28288070 |
tgtttgagagatttgtgagtgtcctgtgtgggtttt |
28288035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28310431 - 28310651
Alignment:
| Q |
1 |
ccttagtttcttccacaaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaag |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
28310431 |
ccttagtttcttccatgaagctaatgttggaagcatcccaattgataatttgtcatgatcaagtgcacaaagtgcatgtgggacagttctattagagaag |
28310530 |
T |
|
| Q |
101 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
200 |
Q |
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||||| |||||||||||||| |||||||||||| ||| || ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
28310531 |
atttgagaattttcatgtaaaacttgtttggctagttgaggtgatgagattactatggttgttaatgttcctagttttagtgtcataattggtccataga |
28310630 |
T |
|
| Q |
201 |
tttgtgagagttttgtgagtg |
221 |
Q |
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| | |||||| |||||||||| |
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| T |
28310631 |
tgtttgagagatttgtgagtg |
28310651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28321005 - 28321240
Alignment:
| Q |
1 |
ccttagtttcttccacaaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||||| || ||| |
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| T |
28321005 |
ccttagtttcttccacaaatttaatgttggaacccacccaactgagaatttgtcatgatcaactgcagagattgcatgtgggacagttctatttgaaaag |
28321104 |
T |
|
| Q |
101 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
200 |
Q |
| |
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||||| ||||| |||||||| ||||||||||||||||||| || || || |||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
28321105 |
atttgagaattgtcatgtaaaacttgtttggctacttgtggggaagagatcactatggttgttatgcttcctagttttaatgtcatgattggtccataga |
28321204 |
T |
|
| Q |
201 |
tttgtgagagttttgtgagtgccttatgtgggtttt |
236 |
Q |
| |
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||| |||||||||||| | |||||| ||||| |||| |
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| T |
28321205 |
tttttgagagttttgttaatgccttgtgtggatttt |
28321240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28331484 - 28331719
Alignment:
| Q |
1 |
ccttagtttcttccacaaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||| || ||||| | || |||||||||||| |
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| T |
28331484 |
ccttagtttcttccacaaagctaatgttggaagtgttcctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaat |
28331583 |
T |
|
| Q |
101 |
atttgggaattttcatgtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagt |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
28331584 |
atttgggaattttcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccatagg |
28331683 |
T |
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| Q |
201 |
tttgtgagagttttgtgagtgccttatgtgggtttt |
236 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||| |
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| T |
28331684 |
tttttgagagttttgtgagtgccttgtgtgggtttt |
28331719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 28336390 - 28336506
Alignment:
| Q |
123 |
cttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagttttgtgagag---ttttgtgag |
219 |
Q |
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||||||||| || |||||| ||||| |||||||||| |||||| | || ||||||||||||||||||||||| ||| ||| ||||| ||||||||| |
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| T |
28336390 |
cttgtttggttagttgtggggatgagattactatggatgttatgttgccaagttttagtgtcatgattggtccgtagattttagagagtttttttgtgag |
28336489 |
T |
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| Q |
220 |
tgccttatgtgggtttt |
236 |
Q |
| |
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|| ||| |||||||||| |
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| T |
28336490 |
tgacttgtgtgggtttt |
28336506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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