View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_low_105 (Length: 246)

Name: NF18068_low_105
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_low_105
NF18068_low_105
[»] chr1 (11 HSPs)
chr1 (13-246)||(6512895-6513128)
chr1 (14-246)||(6506994-6507226)
chr1 (13-244)||(6521508-6521739)
chr1 (13-245)||(6517295-6517527)
chr1 (27-184)||(47713341-47713498)
chr1 (27-185)||(47745923-47746081)
chr1 (27-185)||(47760255-47760413)
chr1 (27-184)||(47718135-47718292)
chr1 (24-120)||(6500291-6500387)
chr1 (24-120)||(47777837-47777933)
chr1 (23-178)||(6523520-6523675)
[»] scaffold0341 (2 HSPs)
scaffold0341 (14-246)||(1019-1251)
scaffold0341 (14-245)||(8674-8905)
[»] chr5 (3 HSPs)
chr5 (26-193)||(28831385-28831552)
chr5 (27-115)||(28856659-28856747)
chr5 (27-115)||(28861936-28862024)
[»] chr7 (1 HSPs)
chr7 (117-163)||(704378-704424)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 6513128 - 6512895
Alignment:
Q  13 ataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6513128 ataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggttt 6513029  T
Q  113 ctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6513028 ctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaat 6512929  T
Q  213 tcatctgtctttctaacacaactttgtcaaaatc 246  Q
    ||||||||||||||||||||||||||||||||||    
T  6512928 tcatctgtctttctaacacaactttgtcaaaatc 6512895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 6507226 - 6506994
Alignment:
Q  14 taacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttc 113  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6507226 taacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttc 6507127  T
Q  114 tataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaatt 213  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |  | ||||    
T  6507126 tataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaatt 6507027  T
Q  214 catctgtctttctaacacaactttgtcaaaatc 246  Q
    || ||| | ||||||||||||||||||||||||    
T  6507026 caactgcccttctaacacaactttgtcaaaatc 6506994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 6521508 - 6521739
Alignment:
Q  13 ataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggttt 112  Q
    |||| ||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6521508 ataatgatggtggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttccaacaaagatatcaactacggttt 6521607  T
Q  113 ctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaat 212  Q
    ||||||||||||||||||||  ||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||    
T  6521608 ctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaat 6521707  T
Q  213 tcatctgtctttctaacacaactttgtcaaaa 244  Q
    ||| ||||  |||||||||||| |||||||||    
T  6521708 tcaactgttcttctaacacaacattgtcaaaa 6521739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 6517527 - 6517295
Alignment:
Q  13 ataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggttt 112  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  6517527 ataacgatggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggttt 6517428  T
Q  113 ctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaat 212  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||| | ||||| |||||||||| ||||||  |  | |||    
T  6517427 ctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaat 6517328  T
Q  213 tcatctgtctttctaacacaactttgtcaaaat 245  Q
    ||| |||| ||||||||||||| ||||||||||    
T  6517327 tcaactgtgtttctaacacaacgttgtcaaaat 6517295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 47713498 - 47713341
Alignment:
Q  27 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 126  Q
    ||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| ||||||||||||||   | ||||||||||||||||| |||| |||||    
T  47713498 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47713399  T
Q  127 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 184  Q
    ||||   ||||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  47713398 atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc 47713341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 47746081 - 47745923
Alignment:
Q  27 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 126  Q
    ||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| ||||||||||||||   | ||||||||||||||||| |||| |||||    
T  47746081 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47745982  T
Q  127 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaaccc 185  Q
    ||||   |||||| || ||||||||||| |||||||| || ||||||||||| ||||||    
T  47745981 atggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaaccc 47745923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 47760413 - 47760255
Alignment:
Q  27 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 126  Q
    ||||||||| |||| ||||||||||| || ||||| |||||| || | |||| ||| |||||||||  ||| ||||||||||||||||| |||   ||||    
T  47760413 aactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttctt 47760314  T
Q  127 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaaccc 185  Q
    ||||   |||||| |||||||||||||| |||||||| |||||||||||||| ||||||    
T  47760313 atggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaaccc 47760255  T

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Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 47718292 - 47718135
Alignment:
Q  27 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 126  Q
    ||||||||| |||| ||||||||||| || ||||| | ||||||| | |||| ||| |||||||||| ||| ||||||||||||||||| |||| |||||    
T  47718292 aactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctctt 47718193  T
Q  127 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 184  Q
    ||||   |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  47718192 atggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 47718135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 6500387 - 6500291
Alignment:
Q  24 ggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataatt 120  Q
    |||||||||||||| || ||||||||| |||||||||| ||||| ||| |||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  6500387 ggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 6500291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 47777837 - 47777933
Alignment:
Q  24 ggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataatt 120  Q
    |||||||||||||| |||||||||||  | | |||||| ||||| ||| |||||||||||| |||||||| | | ||||| ||||||||||| ||||    
T  47777837 ggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatt 47777933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 6523520 - 6523675
Alignment:
Q  23 tggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcc 122  Q
    ||||| ||||||| ||||||| | ||| || | |||||||||  | ||||| |||||||||||||||||||   | ||||||||||||||||| |||| |    
T  6523520 tggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactacggtttctacaatttc 6523619  T
Q  123 tcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgt 178  Q
    ||  | ||   ||||||  ||||||||||||| ||||| ||||| ||||| |||||    
T  6523620 tcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 6523675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 1251 - 1019
Alignment:
Q  14 taacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttc 113  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1251 taacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttc 1152  T
Q  114 tataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaatt 213  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |  | ||||    
T  1151 tataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaatt 1052  T
Q  214 catctgtctttctaacacaactttgtcaaaatc 246  Q
    || ||| | ||||||||||||||||||||||||    
T  1051 caactgcccttctaacacaactttgtcaaaatc 1019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 8905 - 8674
Alignment:
Q  14 taacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttc 113  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8905 taacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttc 8806  T
Q  114 tataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaatt 213  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |  | ||||    
T  8805 tataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaatt 8706  T
Q  214 catctgtctttctaacacaactttgtcaaaat 245  Q
    || ||| | |||||||||||||||||||||||    
T  8705 caactgcccttctaacacaactttgtcaaaat 8674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 28831552 - 28831385
Alignment:
Q  26 taactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctct 125  Q
    |||||||||||  |||||||| |||||  ||||||| ||||| ||| |||| ||||| |||||||||| ||| |||| |||||||||||| || | |||     
T  28831552 taactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctca 28831453  T
Q  126 tatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattg 193  Q
    || || | |  || | |||||||| |||| || ||| | |||||||||||||| || || ||||||||    
T  28831452 tacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgttaatccaaatgattg 28831385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 28856747 - 28856659
Alignment:
Q  27 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttcta 115  Q
    ||||||||||  |||||||| |||||  ||||||| ||||| ||| |||| ||||| |||||||||| ||| |||| ||||||||||||    
T  28856747 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttcta 28856659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 28862024 - 28861936
Alignment:
Q  27 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttcta 115  Q
    ||||||||||  |||||||| |||||  ||||||| ||||| ||| |||| ||||| |||||||||| ||| |||| ||||||||||||    
T  28862024 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttcta 28861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 704378 - 704424
Alignment:
Q  117 aattcctcttatggaataaacaccgacaaagtaaacgctattggact 163  Q
    ||||| |||||||  |||||||| |||||||||||||||||||||||    
T  704378 aattcatcttatgacataaacactgacaaagtaaacgctattggact 704424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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