View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_107 (Length: 240)
Name: NF18068_low_107
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_107 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 34910079 - 34909867
Alignment:
| Q |
17 |
aataagtccttttggatgctccatccaaccagcatttggaagcagcatatttggtttaacaggcccccctgcttttggttctacaggcactgcatctggt |
116 |
Q |
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| T |
34910079 |
aataagtccttttggatgctccatccaaccagcatttggaagcagcatatttggtttaacaggcccccctgcttttggttctacaggcactgcatctggt |
34909980 |
T |
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| Q |
117 |
gctaccggtgcccctgttttttgtgtaaccagcacccctgtttattttgtaatcaacacacctgnnnnnnnngtaaccagcacccctgcatttggttcaa |
216 |
Q |
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| T |
34909979 |
gctaccggtgcccctgttttttgtgtaaccagcacccctgtttattttgtaatcaacacacctgttttttttgtaaccagcacccctgcatttggttcaa |
34909880 |
T |
|
| Q |
217 |
cctcaaccccggc |
229 |
Q |
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||||||||||||| |
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| T |
34909879 |
cctcaaccccggc |
34909867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 28543523 - 28543581
Alignment:
| Q |
42 |
caaccagcatttggaagcagcatatttggtttaacaggcccccctgcttttggttctac |
100 |
Q |
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| T |
28543523 |
caaccagtatttggaagcaacatatttggtttaacaggcacccctgcttttggtgctac |
28543581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 34896213 - 34896183
Alignment:
| Q |
42 |
caaccagcatttggaagcagcatatttggtt |
72 |
Q |
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| T |
34896213 |
caaccagcatttggaagcagcatatttggtt |
34896183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 34896016 - 34895983
Alignment:
| Q |
191 |
aaccagcacccctgcatttggttcaacctcaacc |
224 |
Q |
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| T |
34896016 |
aaccagcacccctgcatttggttcaacttcaacc |
34895983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 34915933 - 34915900
Alignment:
| Q |
191 |
aaccagcacccctgcatttggttcaacctcaacc |
224 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
34915933 |
aaccagcacccctgcatttggttcaacttcaacc |
34915900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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