View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_110 (Length: 232)
Name: NF18068_low_110
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_110 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 31035175 - 31034974
Alignment:
| Q |
13 |
gcaacatctatctatctacattgattttaaagaagggataagtaagttgattatttgttcagctttaaaattatacaatatcatcacattaataaaattc |
112 |
Q |
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| T |
31035175 |
gcaacatctatctatctacattgattttgaagaagggataagtaagttgattatttgttcagctttaaaattatacaatatcatcacattaataaaattc |
31035076 |
T |
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| Q |
113 |
ctgttctacccaattttctctctccaaatcttatttgtttagaatggtaaatgtgaatcaaaaaaggattaagtggtaaatgctcaacgcataacagaag |
212 |
Q |
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| T |
31035075 |
ctgttctacccaattttctctctccaaatcttatttgtttagaatggtaaatgtgaatcaaaaaaggattaagtggtaaatgctcaacgcataacagaag |
31034976 |
T |
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| Q |
213 |
gg |
214 |
Q |
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|| |
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| T |
31034975 |
gg |
31034974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 30366185 - 30366324
Alignment:
| Q |
36 |
attttaaagaagggataagtaagttgattatttgttcagctttaaaattatacaatatcatcacattaataaaattcctgttctacccaattttctctct |
135 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
30366185 |
attttgaagaagggatgagtaagttgattatttgttcagctttaaaattatacaatatcatcacattaacaaaatccttgttctacccaattttctctct |
30366284 |
T |
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| Q |
136 |
ccaaatcttatttgtttagaatggtaaatgtgaatcaaaa |
175 |
Q |
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| T |
30366285 |
ctaaatcttatttgtttagaatggtaaatgtgaatcaaaa |
30366324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 5339 - 5427
Alignment:
| Q |
17 |
catctatctatctacattgattttaaagaagggataagtaagttgattatttgttcagctttaaaattatacaatatcatcacattaat |
105 |
Q |
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|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
5339 |
catctatctatctatattgattttgaagaagggatgggtaagttgattatttgttcagcattcaaattatacaaaatcatcacattaat |
5427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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