View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_111 (Length: 228)
Name: NF18068_low_111
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_111 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 39083660 - 39083835
Alignment:
| Q |
51 |
ctaattctcacttcatccctaattataaannnnnnnacaagtagggataaatatgtgaattaaataacacaaatttcaaacaaatttattactacaataa |
150 |
Q |
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| T |
39083660 |
ctaattctcacttcatccctaattataaattgttttacaagtagggataaatatgtgaa---aataacacaaatttcaaacaaatttattactacaataa |
39083756 |
T |
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| Q |
151 |
cgtttcttaatacaagtgatttttgttatagattcttatacttgt-aatgctagtatttgatatggtattttacttatt |
228 |
Q |
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| T |
39083757 |
catttctcaatacaagtgatttttgttatagattcttatacttgtaaatgctattatttgatttggtattttacttatt |
39083835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 15542509 - 15542449
Alignment:
| Q |
117 |
acacaaatttcaaacaaatttattactacaataacgtttcttaatacaagtgatttttgtt |
177 |
Q |
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| T |
15542509 |
acacatatttgaaacaaatttattattctaataatttttcttaatactagtgatttttgtt |
15542449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 30588191 - 30588130
Alignment:
| Q |
115 |
taacacaaatttcaaacaaatttattactacaataacgtttcttaatacaagtgatttttgt |
176 |
Q |
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| T |
30588191 |
taacacatatttcaaataaatttattacttcaacaacttttcttaataccagtgatttttgt |
30588130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 15037256 - 15037208
Alignment:
| Q |
130 |
acaaatttattactacaataacgtttcttaatacaagtgatttttgtta |
178 |
Q |
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| T |
15037256 |
acaaatttattactccaatgacttttcttaatacccgtgatttttgtta |
15037208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 26087097 - 26087044
Alignment:
| Q |
125 |
ttcaaacaaatttattactacaataacgtttcttaatacaagtgatttttgtta |
178 |
Q |
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| T |
26087097 |
ttcagacaaatttattacttcaacaacttttcttgatacacgtgatttttgtta |
26087044 |
T |
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