View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_113 (Length: 223)
Name: NF18068_low_113
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_113 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 340661 - 340851
Alignment:
| Q |
15 |
aaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttaccacaattcctttggaacatatcacaaattcatgaattttcagctaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
340661 |
aaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttaccacaattcctttggaacatatcacaaattcatgatttttcagctaaa |
340760 |
T |
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| Q |
115 |
ttgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccggcatgtatggtgttatcacaactgatccattgaatgttc |
205 |
Q |
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| T |
340761 |
ttgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccggcatgtatggtgttatcacaactgatccattgaatgttc |
340851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 336623 - 336813
Alignment:
| Q |
15 |
aaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttaccacaattcctttggaacatatcacaaattcatgaattttcagctaaa |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||| |
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| T |
336623 |
aaaatgcctcaaaaccccagccttcacaaattggccttttgttggtatgttaccacaattcctttggaacatatcagacatccatgatttttcagctaaa |
336722 |
T |
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| Q |
115 |
ttgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccggcatgtatggtgttatcacaactgatccattgaatgttc |
205 |
Q |
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||||||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| ||||||| |||||||||||||||| |
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| T |
336723 |
ttgttgacatcaaaaggtggaacaatggagttcataggaccatggtttaccaacatgtatgctgtaatcacaaacgatccattgaatgttc |
336813 |
T |
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