View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_12 (Length: 620)
Name: NF18068_low_12
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 11 - 605
Target Start/End: Complemental strand, 35351638 - 35351044
Alignment:
| Q |
11 |
caaaggtcaacatgcagagcagataaccattttttctacgatgtgtgaatgtgatgagatgcatgtaaaataatatgcacatgtacaatgataactatgc |
110 |
Q |
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| T |
35351638 |
caaaggtcagcatgcagagcagataaccattttttctacgatgtgtgaatgtgatgagatgcatgtaaaataatatgcacatgcacaatgataactatgc |
35351539 |
T |
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| Q |
111 |
cactaagaataatatgttgctatttggttttgctgaaatagtcacatcctatataaaaataaaaagtttttccttaaacatcacttctgatattcaattt |
210 |
Q |
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| T |
35351538 |
cactaagaataatatgttgctatttggttttgctgaaatagtcacatcctatataaaaataaaaagtttttccttaaacatcacttctgatattcaattt |
35351439 |
T |
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| Q |
211 |
aagcaaataattgaatttacaaatctgattttctcacactacctttctctctcatcacttttatacctcctcaccctttgtgtctgtttccttttcctat |
310 |
Q |
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| T |
35351438 |
aagcaaataattgaatttacaaatctgattttctcacactacctttctctctcatcacttttatacctcctcaccctttgtgtctgtttccttttcctat |
35351339 |
T |
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| Q |
311 |
tacatcatctaccacttctctcactttctttcctctaactctttctttcgtgcattacccacaacccatatccaacttaagatgtcattattctttaatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351338 |
tacatcatctaccacttctctcactttctttcctctaactctttctttcgtgcattacccacaacccatatccaacttaagatgtcattattctttaatt |
35351239 |
T |
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| Q |
411 |
tatactcccttcacaacatcatttgggacctggaatcttaaattcttcaagttgtaaaagcagtttcatcaaatgagttgtatcacaccaaaatccaaat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351238 |
tatactcccttcacaacatcatttgggacctggaatcttaaattcttcaagttgtaaaagcagtttcatcaaatgagttgtatcacaccaaaatccaaat |
35351139 |
T |
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| Q |
511 |
gagaaataattctttaacaaatcattttagacaacttttgcaacaactttctatgtggttaacgtgattccaatatattgttaaagaatatacat |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351138 |
gagaaataattctttaacaaatcattttagacaacttttgcaacaactttctatgtggttaacgtgattccaatatattgttaaagaatatacat |
35351044 |
T |
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