View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_120 (Length: 204)
Name: NF18068_low_120
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_120 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 43487489 - 43487631
Alignment:
| Q |
43 |
tgcactcttatatatgacgcacggatacagaaacgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
142 |
Q |
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| T |
43487489 |
tgcactcttatctatgacgtacggatacagaaacgacacaggcatgccaacaccgctaataaattgtgaaaatttcataattaagtgtaatcacatgtgt |
43487588 |
T |
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| Q |
143 |
gagtgatttcaagacacacctaatttaaggaatgttcgtgctt |
185 |
Q |
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| T |
43487589 |
gagtgatttcaggacacaccttttttaaggaatgttcgtgctt |
43487631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 44797035 - 44796971
Alignment:
| Q |
77 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtg |
141 |
Q |
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| T |
44797035 |
gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacatgtg |
44796971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 21139089 - 21139028
Alignment:
| Q |
55 |
tatgacgcacggatacagaaac-gacacagacatgccaacaccgttaataaattgagaaaat |
115 |
Q |
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| T |
21139089 |
tatgaagcacggatacagacacagacactgacatgtcaacaccgttaataatttgagaaaat |
21139028 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 36281678 - 36281734
Alignment:
| Q |
84 |
acatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgt |
140 |
Q |
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| T |
36281678 |
acatgccaataccgttaataatttgagaaaatcacataatttagtgtaatcatatgt |
36281734 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 12264904 - 12264837
Alignment:
| Q |
75 |
acgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
142 |
Q |
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| T |
12264904 |
acgacactgacatgccaacaccgctaattatttgagaaaattacatgattcagtgtaattatatgtgt |
12264837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 32804607 - 32804548
Alignment:
| Q |
83 |
gacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
142 |
Q |
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| T |
32804607 |
gacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgt |
32804548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 4201394 - 4201438
Alignment:
| Q |
89 |
ccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
133 |
Q |
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|||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
4201394 |
ccaacaccgttaataatttgaaaaaatcacataattaagtgtaat |
4201438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 192322 - 192257
Alignment:
| Q |
77 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
142 |
Q |
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|
||||| |||| ||| ||||||||||||| ||||||||||| ||||||| ||||||| ||| |||| |
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| T |
192322 |
gacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattacaagtgt |
192257 |
T |
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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 92793 - 92858
Alignment:
| Q |
77 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt |
142 |
Q |
| |
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||||| |||| ||| |||||| |||||| ||||||||||| ||||||| |||||||| ||| |||| |
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| T |
92793 |
gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgt |
92858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 25038129 - 25038088
Alignment:
| Q |
92 |
acaccgttaataaattgagaaaattgcataattaagtgtaat |
133 |
Q |
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||||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
25038129 |
acaccgttaataatttgagaaaattacataatttagtgtaat |
25038088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 31579286 - 31579242
Alignment:
| Q |
89 |
ccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
133 |
Q |
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|||||||||||||||| |||||||||| ||||||| |||||||| |
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| T |
31579286 |
ccaacaccgttaataatttgagaaaatcacataattcagtgtaat |
31579242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 34073420 - 34073364
Alignment:
| Q |
77 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
133 |
Q |
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||||| |||||||||||| || |||||| |||||||||| ||||||| |||||||| |
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|
| T |
34073420 |
gacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaat |
34073364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 25452221 - 25452165
Alignment:
| Q |
77 |
gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat |
133 |
Q |
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||||| ||||||||||||| | |||||| |||||||||| ||||||| |||||||| |
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|
| T |
25452221 |
gacaccgacatgccaacactgctaataatttgagaaaatctcataattcagtgtaat |
25452165 |
T |
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