View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_13 (Length: 601)
Name: NF18068_low_13
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Complemental strand, 55712031 - 55711601
Alignment:
| Q |
15 |
agcacagaataggactgtccgatatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttccacaagtttcaatgagtgtcctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55712031 |
agcacagaataggactgtccgatatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttccacaagtttcaatgagtgtcctt |
55711932 |
T |
|
| Q |
115 |
ggattatgaagttgatggatgctacgagccccacatttgatattctgaatccatatgtcttacctgcactcctgcagattgaacatttaaacaattgagt |
214 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55711931 |
ggattatgaagttgatggatgctgcgagccccacatttgatattctgaatccatatgtcttacctgcactcctgcagattgaacatttaaacaattgtgt |
55711832 |
T |
|
| Q |
215 |
aaatgtaataagtacatgagtagattcaacatttaagcaatgcattaaaataaaaaatgtactactactatcacaagttgtgattttttctaccaacctt |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55711831 |
aaatgtaataagtatatgagtagattcaacatttaagcaatgcattaaaataaaaaatgtactactactatcacaagttgtgattttttctaccaacctt |
55711732 |
T |
|
| Q |
315 |
gattgacaatgaatgtgtttccattccaaccacaaccattgataagaaggcaatcagggaagggaagattgtgaccattctcgaggactcgtctcagtct |
414 |
Q |
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| T |
55711731 |
gattgacagtgaatgtgtttccattccaaccacgaccattgataagaaggcaatcagggaagggaagattgtgaccattctcgaggactcgtctcagtct |
55711632 |
T |
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| Q |
415 |
ctaaaacatcagagggtaagtaataagtatt |
445 |
Q |
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| T |
55711631 |
ctaaaacatcagagggtaagtaataagtatt |
55711601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 55296066 - 55295899
Alignment:
| Q |
15 |
agcacagaataggactgtccgatatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttccacaagtttcaatgagtgtcctt |
114 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55296066 |
agcacagaataggactgcccgagatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttctacaagtttcaatgagtgtcctt |
55295967 |
T |
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| Q |
115 |
ggattatgaagttgatggatgctacgagccccacatttgatattctgaatccatatgtcttacctgca |
182 |
Q |
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| T |
55295966 |
ggattctgaagttgatggatgttgcgagcccaacatttgatattctgaatctatatgtcttacctgca |
55295899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 241 - 445
Target Start/End: Complemental strand, 55295871 - 55295668
Alignment:
| Q |
241 |
caacatttaagcaatgcattaaaataaaaaatgtactactacta---tcacaagttgtgattttttctaccaaccttgattgacaatgaatgtgtttcca |
337 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
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| T |
55295871 |
caacatttaagcaatgcattaaaatcaaaa-tgtactactactactatcacaagtt---attttttctaccaaccttgatcgacagtgaatgtgtttcca |
55295776 |
T |
|
| Q |
338 |
ttccaaccacaaccattgataagaaggcaatcagggaagggaagattgtgaccattctcgaggactcgtctcagtctctaaaacatcagagggtaagtaa |
437 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
55295775 |
ttccaaccacggccattgataagaaggccatcagggaagggaagattgtggccattctccaggactcgtctcaatctctaaaacatcagagggtacgtaa |
55295676 |
T |
|
| Q |
438 |
taagtatt |
445 |
Q |
| |
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|||||||| |
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|
| T |
55295675 |
taagtatt |
55295668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 511 - 583
Target Start/End: Complemental strand, 55711535 - 55711463
Alignment:
| Q |
511 |
tttaattacgcggtggcctagcttgaaccaatcaccagcaagtatggtaaagtctcctgcggagggaggaaag |
583 |
Q |
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| T |
55711535 |
tttaattacacggtggcctagcttgaaccaatcaccagcaagtatggtaaagtctcctgcggagggaggaaag |
55711463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 55295603 - 55295554
Alignment:
| Q |
515 |
attacgcggtggcctagcttgaaccaatcaccagcaagtatggtaaagtc |
564 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
55295603 |
attacgcggtggcctagcttggaccaatcaccagcaagtaaggtaaagtc |
55295554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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