View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_18 (Length: 579)
Name: NF18068_low_18
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 238 - 560
Target Start/End: Original strand, 41124872 - 41125194
Alignment:
| Q |
238 |
tgtgtataggcctccaaaacattagaaggtatacacacnnnnnnntattaaagaaatgacaactttatttttctcatattttacctaacatgtaatagta |
337 |
Q |
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| T |
41124872 |
tgtgtataggcctccaaaacattagaaggtatacacacaaaaaaatattaaagaaatgacaactttatttttctaatattttacctaacatgtaatagta |
41124971 |
T |
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| Q |
338 |
atacccttgttttttatgtgctgttttttccttctaattattctcttcaactcatctggttcacaaggaattgcaagtgctccaacttgagagaatccaa |
437 |
Q |
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| T |
41124972 |
atacccttgttgtttatgtgctgttttttccttctaatgattctcttcaactcatctggttcacaaggaattgcaagtgctccaacttgagagaatccaa |
41125071 |
T |
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| Q |
438 |
actcttcttcagcttgctttaacaatttcacaaattcaggatgatctaaatattccaattcaatacaaaatctttctgttttccacccttgtgttgcaat |
537 |
Q |
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| T |
41125072 |
actcttcttcagcttgctttaacaatttcacaaattcaggatgatctaaatattccaattcaatacaaaatctttctgttttccacccttgtgttgcaat |
41125171 |
T |
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| Q |
538 |
caccacaaaatgaccttgcttca |
560 |
Q |
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| T |
41125172 |
caccacaaaatgaccttgcttca |
41125194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 41124646 - 41124843
Alignment:
| Q |
12 |
aagcaaaggtcctcattattcactaataataaccatttttacaagctaaacttacaagagaaggaaatgcatgctaattaatctagccctcttgcacctg |
111 |
Q |
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| T |
41124646 |
aagcaaaggtgctcattattcactaataataaccatttttacaagctaaacttacaagagaaggaaatgcatgctaattaatctagccctcttgcacctg |
41124745 |
T |
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| Q |
112 |
caagttaaagttattttacttacattacaggggcacaaatacacaacaaaatcacaatcttattgcatgtcctctagctagctagttcactaattatt |
209 |
Q |
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| T |
41124746 |
caagttaaagttattttacttacattacaggggcacaaatacacaacaaaatcacaatcttattgcatgtcctctagctagctagttcactaattatt |
41124843 |
T |
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