View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_low_2 (Length: 956)

Name: NF18068_low_2
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_low_2
NF18068_low_2
[»] chr1 (8 HSPs)
chr1 (558-956)||(42125852-42126257)
chr1 (14-332)||(42126544-42126877)
chr1 (315-561)||(42126285-42126532)
chr1 (364-456)||(1014808-1014900)
chr1 (249-329)||(22875746-22875826)
chr1 (457-490)||(9539762-9539795)
chr1 (456-490)||(23347810-23347844)
chr1 (457-490)||(10781365-10781398)
[»] chr2 (5 HSPs)
chr2 (157-267)||(34190309-34190419)
chr2 (702-869)||(31069701-31069869)
chr2 (701-836)||(35509071-35509208)
chr2 (456-490)||(18703765-18703799)
chr2 (804-885)||(12544850-12544930)
[»] chr7 (2 HSPs)
chr7 (180-260)||(8615416-8615496)
chr7 (456-490)||(34346925-34346959)
[»] chr4 (6 HSPs)
chr4 (364-456)||(8904089-8904181)
chr4 (456-490)||(2813943-2813977)
chr4 (456-488)||(4377192-4377224)
chr4 (364-444)||(45066078-45066158)
chr4 (456-490)||(36247781-36247815)
chr4 (456-501)||(52849846-52849891)
[»] chr8 (4 HSPs)
chr8 (364-456)||(45483998-45484090)
chr8 (804-858)||(37684890-37684943)
chr8 (456-496)||(10381369-10381409)
chr8 (456-490)||(44873239-44873273)
[»] chr6 (3 HSPs)
chr6 (364-456)||(18819130-18819222)
chr6 (364-456)||(24903898-24903990)
chr6 (456-490)||(16461747-16461781)
[»] chr3 (7 HSPs)
chr3 (364-456)||(26905368-26905460)
chr3 (364-456)||(36615580-36615672)
chr3 (456-523)||(24309797-24309864)
chr3 (364-416)||(28210994-28211046)
chr3 (456-490)||(7856451-7856485)
chr3 (693-755)||(26255184-26255246)
chr3 (456-490)||(36475421-36475455)
[»] chr5 (3 HSPs)
chr5 (275-323)||(26460003-26460051)
chr5 (456-490)||(34751195-34751229)
chr5 (456-490)||(36744891-36744925)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 558 - 956
Target Start/End: Complemental strand, 42126257 - 42125852
Alignment:
Q  558 ccaactcagttatccgagagaactgacctgatgtgttttggaccatccagttcagacgggttgggtcggttattgttatttttgtccagccctaaaaacc 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42126257 ccaactcagttatccgagagaactgacctgatgtgttttggaccatccagttcaaacgggttgggtcggttattgttatttttgtccagccctaaaaacc 42126158  T
Q  658 atctaatcttctatcaggattacttaaccttaggtgaacacaaggaagactaggaacaaaatcccacagtcaaccaacccctaaacaaatccaccacatg 757  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  42126157 atctaatcttctattaggattacttgaccttagatgaacacaaggaagactaggaacaaaaccccacattcaaccaacctctaaacaaatccaccacatg 42126058  T
Q  758 aactatcagtgtcaacgcataagaagttaataatctcactcataagggaacacgtgtgatcaaaatattttcctaaaaaatcactttcaagaggtgaatt 857  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  42126057 aattatcagtgtcaacacataagaagttaataatctcactcataagggaacatgtgtgatcaaaatattttcctaaaaaatcactttcaagaagtgaatt 42125958  T
Q  858 tcaacatatccaccggctggaacacatatgtctcttgcctcaaaaatatgcaagctacgtga-------tcttcacaagaaccacagatatcataaggtg 950  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |||       |||||||||||||||||||||| ||||||||    
T  42125957 tcaacatatccaccagttggaacacatatgtctcttgcctcaaaaatatgcgagctacatgatcttcattcttcacaagaaccacagatattataaggtg 42125858  T
Q  951 ttaaca 956  Q
    ||||||    
T  42125857 ttaaca 42125852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 42126877 - 42126544
Alignment:
Q  14 attatactccaggattaaagagaatttgttagttatggctgctcataannnnnnngtgttgactcttttcatggcttgtgagcatttgttgtttgttatg 113  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||    
T  42126877 attaaactccaggattaaagagaatttgtttgttatggctgctcataatttttttgtgtcgactcttttcatggcttgtgagcatttgttgtttgttatg 42126778  T
Q  114 gctgctgagaaaattaaacttcagtaaat---------------cgaatgcatcaccgttttgtttgttatgctcacaattttgatggaaggaatagctc 198  Q
    |||||||||||||||||||| ||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126777 gctgctgagaaaattaaactccagtaaattaaacttcagttaatcgaatgcatcaccgttttgtttgttatgctcacaattttgatggaaggaatagctc 42126678  T
Q  199 ttaattggccattgaattgtttgtttgttatgctcacaaagtcattgctatgttttataggacgaagaannnnnnncccgtgatttctagaaacaaagct 298  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||    
T  42126677 ttaattggccattgaattgtttgtttgttatactcacaaagtcattgttatgttttataggacgaagaatttttttcccgtgatttctagaaacaaagct 42126578  T
Q  299 agttcttcggctaatcaagaaccattgaatactc 332  Q
    ||||||||||||||||||||||||||||||||||    
T  42126577 agttcttcggctaatcaagaaccattgaatactc 42126544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 315 - 561
Target Start/End: Complemental strand, 42126532 - 42126285
Alignment:
Q  315 aagaaccattgaatactca-catccaagtgaaccacgacatgaagttatacccaactcgatcaacgagagtattaaagttgttgattacaaattgttgga 413  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||    
T  42126532 aagaaccattgaatactcaacatccaagtgaaccacgacatgaagttatacccaactcgaccaatgatggtattaaagttgttgattacaaattgttgga 42126433  T
Q  414 aacaggccctagacttaggcctccaatttcatgttatcatcctaatatagtttgcattattgtttctttgaaattttggcctcgtatgaaccagaagtct 513  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42126432 aacaggccctggacttaggcctccaatttcatgttatcatcctaacatagtttgcattattgtttctttgaaattttgacctcgtatgaaccagaagtct 42126333  T
Q  514 agattcacccatgcactgggccaataattccaacttataaccgaccaa 561  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42126332 agattcatccatgcactgggccaataattccaacttataaccgaccaa 42126285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 1014808 - 1014900
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| || |||||||||||||||| ||||||||||||||||  ||  || ||||||||||||||||| | |||||||||    
T  1014808 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaacagatccaggaattaggcctccaatttcaagctatcatcct 1014900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 22875746 - 22875826
Alignment:
Q  249 tgttttataggacgaagaannnnnnncccgtgatttctagaaacaaagctagttcttcggctaatcaagaaccattgaata 329  Q
    |||||||||||| ||||||       |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  22875746 tgttttataggatgaagaaattttttcccgtgctttctagagacaaagctagttcttcggctaatcaagaaccatcgaata 22875826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 9539762 - 9539795
Alignment:
Q  457 aatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||||||||||||||||||||||||||||||    
T  9539762 aatatagtttgcattattgtttctttgaaatttt 9539795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 23347844 - 23347810
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||||||||||||||||||| |||||||||||    
T  23347844 taatatagtttgcattattgtttatttgaaatttt 23347810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 10781365 - 10781398
Alignment:
Q  457 aatatagtttgcattattgtttctttgaaatttt 490  Q
    |||||||||||||||||||||||||| |||||||    
T  10781365 aatatagtttgcattattgtttctttaaaatttt 10781398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 8e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 34190419 - 34190309
Alignment:
Q  157 ttttgtttgttatgctcacaattttgatggaaggaatagctcttaattggccattgaattgtttgtttgttatgctcacaaagtcattgctatgttttat 256  Q
    |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  34190419 ttttgtttgttacgctcacaattttgatggaaggagtaactcttaattggccattgaattgtttgtttgttatgctcacaatgtcattgttatattttat 34190320  T
Q  257 aggacgaagaa 267  Q
    |||| ||||||    
T  34190319 aggatgaagaa 34190309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 702 - 869
Target Start/End: Complemental strand, 31069869 - 31069701
Alignment:
Q  702 gaagactaggaacaaaatcccacagtcaaccaacccctaaacaaatccaccacatga-actatcagtgtcaacgcataagaagttaataatctcactcat 800  Q
    ||||||||||||||||||||| | ||||| |||||  || |||||| | | ||| |  |||||| ||| ||||||||||  |||| || |||||||||||    
T  31069869 gaagactaggaacaaaatccctccgtcaatcaacctatagacaaattcgcaacaagtcactatcggtggcaacgcataatgagttcatgatctcactcat 31069770  T
Q  801 a-agggaacacgtgtgatcaaaatattttcctaaaaaatcactttcaagaggtgaatttcaacatatcca 869  Q
    | | |||||| |||| | || ||| |||||||||||| | ||||||||||||||||||| | ||||||||    
T  31069769 agaaggaacatgtgtaaccagaatgttttcctaaaaact-actttcaagaggtgaatttaaccatatcca 31069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 701 - 836
Target Start/End: Complemental strand, 35509208 - 35509071
Alignment:
Q  701 ggaagactaggaacaaaatcccacagtcaaccaacccctaaacaaatccaccacatga-actatcagtgtcaacgcataagaagttaataatctcactca 799  Q
    ||||||||| ||||| ||||||   |||||||||||| ||||||||||| ||||| || ||||||||| ||| | |||||  |||| || ||| ||||||    
T  35509208 ggaagactatgaacataatcccttggtcaaccaacccttaaacaaatccgccacaagacactatcagtatcatcacataatgagttcatgatcccactca 35509109  T
Q  800 ta-agggaacacgtgtgatcaaaatattttcctaaaaa 836  Q
    || | |||||| |||||| || ||| ||||||||||||    
T  35509108 tagaaggaacatgtgtgaccacaatgttttcctaaaaa 35509071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 18703765 - 18703799
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    |||||||||||||||||||||||||||||||||||    
T  18703765 taatatagtttgcattattgtttctttgaaatttt 18703799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 885
Target Start/End: Original strand, 12544850 - 12544930
Alignment:
Q  804 ggaacacgtgtgatcaaaatattttcctaaaaaatcactttcaagaggtgaatttcaacatatccaccggctggaacacata 885  Q
    |||||||||| || || ||||||||||| ||||| ||||| |||||| ||||||| | ||||||||||  ||||| ||||||    
T  12544850 ggaacacgtgcgaccataatattttcct-aaaaaccacttccaagagatgaatttaaccatatccaccaactggagcacata 12544930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 8615496 - 8615416
Alignment:
Q  180 ttgatggaaggaatagctcttaattggccattgaattgtttgtttgttatgctcacaaagtcattgctatgttttatagga 260  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8615496 ttgatggaaggagtaactcttaattggccattgaattgtttgtttgttatgctcacaaagtcattgttatgttttatagga 8615416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 34346925 - 34346959
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    |||| ||||||||||||||||||||||||||||||    
T  34346925 taatgtagtttgcattattgtttctttgaaatttt 34346959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 8904089 - 8904181
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| ||||||||||||||||||| |||||||||||||| |  ||  || ||||||||||||||||||| |||||||||    
T  8904089 cccaactcgaccaatgagggtattaaagttgttgattataaattgttggaaacggatccaggaattaggcctccaatttcatgctatcatcct 8904181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 2813977 - 2813943
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    |||||||||||||||||||||||||||||||||||    
T  2813977 taatatagtttgcattattgtttctttgaaatttt 2813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 4377224 - 4377192
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatt 488  Q
    |||||||||||||||||||||||||||||||||    
T  4377224 taatatagtttgcattattgtttctttgaaatt 4377192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 45066158 - 45066078
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttca 444  Q
    |||||||||| |||  || |||||||||||||||||||  ||||||||||||| |  ||  || |||||||||||||||||    
T  45066158 cccaactcgaccaataagggtattaaagttgttgattatgaattgttggaaacggatccaggaattaggcctccaatttca 45066078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 36247815 - 36247781
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||||||||||||||||||||||| |||||||    
T  36247815 taatatagtttgcattattgtttctttaaaatttt 36247781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 52849846 - 52849891
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaattttggcctcgtatg 501  Q
    |||||||||||| |||||||||||||| ||||||| ||||| ||||    
T  52849846 taatatagtttgtattattgtttctttaaaattttagcctcatatg 52849891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 45483998 - 45484090
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| || |||||||||||||||| ||||||||||||||||  ||  || ||||||||||||||||| | |||||||||    
T  45483998 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaacagatccaggaattaggcctccaatttcaagctatcatcct 45484090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 804 - 858
Target Start/End: Original strand, 37684890 - 37684943
Alignment:
Q  804 ggaacacgtgtgatcaaaatattttcctaaaaaatcactttcaagaggtgaattt 858  Q
    |||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  37684890 ggaacaagtgtgaccaaaatattttcct-aaaaatcacttccaagaggtgaattt 37684943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 10381409 - 10381369
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaattttggcctc 496  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  10381409 taatatagtttacattattgtttctttgaaattttagcctc 10381369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 44873273 - 44873239
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||||||||||||||||||||||| |||||||    
T  44873273 taatatagtttgcattattgtttctttaaaatttt 44873239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 18819222 - 18819130
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| || |||||||||||||||| ||||||||||||||||  ||  || ||||||||||||||||| | |||||||||    
T  18819222 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaacagatccaggaattaggcctccaatttcaagctatcatcct 18819130  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 24903990 - 24903898
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| || |||||||||||||||| |||||||||||||| |  ||  || ||||||||||||||||| | |||||||||    
T  24903990 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaacggatccaggaattaggcctccaatttcaagctatcatcct 24903898  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 16461747 - 16461781
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    |||||||||||||||||||||||||||||||||||    
T  16461747 taatatagtttgcattattgtttctttgaaatttt 16461781  T

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Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 26905460 - 26905368
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| || |||||||||||||||| ||||||||||||||||  ||  || ||||||||||||||||| | |||||||||    
T  26905460 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaacagatccaggaattaggcctccaatttcaagctatcatcct 26905368  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 36615580 - 36615672
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaacaggccctagacttaggcctccaatttcatgttatcatcct 456  Q
    |||||||||| ||| ||| || |||||||||||||||| ||||||||||||||||  ||  || ||||||||||||||||| | |||||||||    
T  36615580 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaacagatccaggaattaggcctccaatttcaagctatcatcct 36615672  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 24309864 - 24309797
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaattttggcctcgtatgaaccagaagtctagattcaccc 523  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||| |||  |||||| ||| |||||    
T  24309864 taatatagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatccaccc 24309797  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 28211046 - 28210994
Alignment:
Q  364 cccaactcgatcaacgagagtattaaagttgttgattacaaattgttggaaac 416  Q
    |||||||||| ||| ||| || |||||||||||||||| ||||||||||||||    
T  28211046 cccaactcgaccaatgagggtgttaaagttgttgattataaattgttggaaac 28210994  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 7856485 - 7856451
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||| |||||||||||||||||||||||||||    
T  7856485 taatataatttgcattattgtttctttgaaatttt 7856451  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 693 - 755
Target Start/End: Original strand, 26255184 - 26255246
Alignment:
Q  693 gaacacaaggaagactaggaacaaaatcccacagtcaaccaacccctaaacaaatccaccaca 755  Q
    ||||| |||||||||||||||||||||| | ||||||||||| ||  | |||||||| |||||    
T  26255184 gaacaaaaggaagactaggaacaaaatctctcagtcaaccaagccgaatacaaatcctccaca 26255246  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 36475455 - 36475421
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||||||||| |||||||||||||||||||||    
T  36475455 taatatagtttgcgttattgtttctttgaaatttt 36475421  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 26460051 - 26460003
Alignment:
Q  275 cccgtgatttctagaaacaaagctagttcttcggctaatcaagaaccat 323  Q
    |||||| |||| ||| |||||||||||||||||| ||||||||||||||    
T  26460051 cccgtgctttcaagagacaaagctagttcttcggttaatcaagaaccat 26460003  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 34751195 - 34751229
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||| |||||||||||||||||||||||||||    
T  34751195 taatataatttgcattattgtttctttgaaatttt 34751229  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 36744925 - 36744891
Alignment:
Q  456 taatatagtttgcattattgtttctttgaaatttt 490  Q
    ||||||||||||||||||||||||||| |||||||    
T  36744925 taatatagtttgcattattgtttctttaaaatttt 36744891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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