View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_low_21 (Length: 563)

Name: NF18068_low_21
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_low_21
NF18068_low_21
[»] chr3 (3 HSPs)
chr3 (11-545)||(8341538-8342072)
chr3 (75-545)||(26727137-26727604)
chr3 (27-133)||(8333037-8333143)
[»] scaffold0061 (1 HSPs)
scaffold0061 (27-545)||(29813-30337)
[»] scaffold0017 (2 HSPs)
scaffold0017 (27-545)||(168455-168979)
scaffold0017 (12-545)||(173464-174003)
[»] chr1 (8 HSPs)
chr1 (75-545)||(44785757-44786229)
chr1 (121-545)||(44611356-44611786)
chr1 (12-291)||(44144710-44144990)
chr1 (75-494)||(35898699-35899124)
chr1 (395-545)||(44144514-44144664)
chr1 (12-265)||(11544676-11544933)
chr1 (12-126)||(44612085-44612199)
chr1 (307-460)||(11544990-11545143)
[»] chr2 (2 HSPs)
chr2 (27-545)||(29228546-29229062)
chr2 (27-545)||(29341845-29342361)
[»] chr5 (11 HSPs)
chr5 (297-526)||(29508253-29508482)
chr5 (30-112)||(29508115-29508197)
chr5 (27-115)||(29507536-29507624)
chr5 (379-457)||(20761969-20762047)
chr5 (30-115)||(29507611-29507696)
chr5 (30-115)||(29507683-29507768)
chr5 (77-115)||(29507874-29507912)
chr5 (77-115)||(29507946-29507984)
chr5 (77-115)||(29508090-29508128)
chr5 (30-115)||(29507755-29507840)
chr5 (30-115)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 11 - 545
Target Start/End: Complemental strand, 8342072 - 8341538
Alignment:
11 cagagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattccca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
8342072 cagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaaggtgttgcaattgtgagagattccca 8341973  T
111 agttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 210  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8341972 agttgagtaggaatctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 8341873  T
211 tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaatcgtgtagatcaagcttttc 310  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
8341872 tcaaataactgaggtcaagatatgttagatgttacaactcagttattgaaggattgatttcaccactcaaataatgtgaatggtgtagatcaagcttttc 8341773  T
311 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcga 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
8341772 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgccataatcatctcga 8341673  T
411 acgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaaca 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8341672 acgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaaca 8341573  T
511 ccaacaatgcatggaatgtaataatagtatagttt 545  Q
    |||||||||||||||||||||||||||||||||||    
8341572 ccaacaatgcatggaatgtaataatagtatagttt 8341538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 75 - 545
Target Start/End: Complemental strand, 26727604 - 26727137
Alignment:
75 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 174  Q
    ||||||| |||||||||||| |||||||| || |||||||||| |||||||||| | | | ||    |||||||||||| |||||||||||| ||| |||    
26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatga 26727505  T
175 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 274  Q
    | || |||||||| ||||| || ||||| ||| |  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
26727504 aggagccaataaaatttgggatatgacctctaatcatcaatgaactaaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaca 26727405  T
275 actcaaataatatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccg 374  Q
    | | |   ||||  || | || | ||||||  ||| ||||||||| ||||  |||||||||   | |||  |||||||||||||||| ||| || || |     
26727404 attta---aatacaaaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatca 26727308  T
375 tccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaa 474  Q
    |||||||||| |||||| |||||||| |||||| ||| |||||||||||| ||||||||||| |||||||||||||||||||||||  | || || ||      
26727307 tccttccatgtggacaaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttcttgtctccgttct 26727208  T
475 ttatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagttt 545  Q
    | ||| |||||||||||||| ||||| | ||||||||||||||||||| |||| ||| |||| ||||||||    
26727207 tcattgttgagttgaacccaacaatggaagacaacaccaacaatgcatagaatataagaataatatagttt 26727137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 8333143 - 8333037
Alignment:
27 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 126  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
8333143 gaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 8333044  T
127 tcccctc 133  Q
    | |||||    
8333043 ttccctc 8333037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 27 - 545
Target Start/End: Original strand, 29813 - 30337
Alignment:
27 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 126  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
29813 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 29912  T
127 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 226  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
29913 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 30012  T
227 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg 320  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      |  ||| | || ||||||||||||||||||||||||    
30013 aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg 30112  T
321 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 420  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |||||| ||| ||||||||    
30113 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt 30212  T
421 tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgc 520  Q
    | || |||| |||||  ||||||||||| |||||||||| ||| || |||||  || ||  ||||||||||||| ||||| || ||||||| ||||||||    
30213 tcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaacaatggagaacaacactaacaatgc 30312  T
521 atggaatgtaataatagtatagttt 545  Q
    ||| ||||||  |||| ||||||||    
30313 atgtaatgtagcaatattatagttt 30337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 27 - 545
Target Start/End: Complemental strand, 168979 - 168455
Alignment:
27 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 126  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
168979 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 168880  T
127 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 226  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
168879 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 168780  T
227 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg 320  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      |  ||| | || ||||||||||||||||||||||||    
168779 aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg 168680  T
321 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 420  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |||||| ||| ||||||||    
168679 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt 168580  T
421 tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgc 520  Q
    | || |||| |||||  ||||||||||| |||||||||| ||| || |||||  || ||  ||||||||||||| ||||| || ||||||| ||||||||    
168579 tcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaacaatggagaacaacactaacaatgc 168480  T
521 atggaatgtaataatagtatagttt 545  Q
    ||| ||||||  |||| ||||||||    
168479 atgtaatgtagcaatattatagttt 168455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 545
Target Start/End: Complemental strand, 174003 - 173464
Alignment:
12 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 111  Q
    ||||| ||||| || |||||||||||||||||||||||||||  |||||  || |||||  | || |||| ||||| |  ||||||||| ||||| ||||    
174003 agagactgcaacaatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaa 173904  T
112 gttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtatt 211  Q
    ||| |  ||||| |||||| ||||||  ||||||||| ||||||||||  || || |||||||| || |||||||||||||  ||||||| |||||||||    
173903 gttcaaaaggaaccttcccatcataatgaccatttgacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtatt 173804  T
212 caaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaatcg------tgtagatcaagc 305  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |  ||  ||       || ||||||||     
173803 caaataactgaggtctaaatatgttagattttgtaactcagttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaaga 173704  T
306 ttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcat 405  Q
     ||| ||||||||| ||||   |||||||||||| ||| |||||||||||||||||  || || ||||| ||||||||| ||||||||||||||||||||    
173703 ctttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataatcat 173604  T
406 ctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaagga 505  Q
    || ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||  | || |||||  || || || ||||||||||| ||||||||||    
173603 cttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttcatgtctccattctttgttgttaagttgaacccaacaatgaagga 173504  T
506 caacaccaacaatgcatggaatgtaataatagtatagttt 545  Q
    ||||||||||| |||||| |||||||||||| ||||||||    
173503 caacaccaacagtgcatgtaatgtaataatattatagttt 173464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 75 - 545
Target Start/End: Original strand, 44785757 - 44786229
Alignment:
75 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 174  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||  | |||||||||  |||||| ||||||||||||||||||||||    
44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctga 44785856  T
175 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 274  Q
    | |||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||    
44785857 aggatccaataaattttggaatttgatcattagtaatcaaatgactgaggtctagatattttagatgtcgcagctcagttattgaaggattgattacacc 44785956  T
275 actcaaataatatgaatcgtgta-gatcaagcttttcaac--ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttgga 371  Q
    ||||||||||  ||  || || |  ||  || || | |||  ||| || ||||| ||||||||||||| ||||| ||||||||| ||||| ||| |||||    
44785957 actcaaataacgtgtttc-tgaaccatgcagattctgaacatatatccagtttggttgttgcattgaactccttcccatttgcaacaatctgcatttgga 44786055  T
372 ccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccat 471  Q
    ||||| ||| ||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| ||| ||||||||||||| || || |    
44786056 ccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtttgaatgtgaggagtgcttgtctctcactcactttgcactttgtgtctccct 44786155  T
472 taattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagttt 545  Q
    |   | || ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||    
44786156 tctcttttattgagttgaacccagcaatgaaggagaacaccaacaatgcatgtaatgtaataatattatagttt 44786229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 121 - 545
Target Start/End: Complemental strand, 44611786 - 44611356
Alignment:
121 gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataact 220  Q
    |||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||    
44611786 gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact 44611687  T
221 gaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaa------ataatatgaatcgtgtagatcaagcttttcaaca 314  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||         ||| ||  | || ||||||||  ||| ||||    
44611686 gaggtttagatatgttagatgttgcaactcagttattgaaggattgatttcaccaaacaatcggcgtcgatacgagccatgcagatcaagactttgaaca 44611587  T
315 taaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgc 414  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||||||| |||  || ||| |||||||||| ||||||||| ||||| |||||| ||| |     
44611586 taaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacataccatactcatcttgaaggt 44611487  T
415 cttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaa 514  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||| || |  |||||| || ||    ||||||||||| ||||| || ||||||||||    
44611486 cttgtttaaacgtgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagttgaacccaacaatggagaacaacaccaa 44611387  T
515 caatgcatggaatgtaataatagtatagttt 545  Q
    ||||||||  |||||| ||||| ||||||||    
44611386 caatgcatttaatgtattaatattatagttt 44611356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 44144990 - 44144710
Alignment:
12 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 111  Q
    ||||| |||||||| |||||||||||||||||||||||||||  |||||  || |||||  | || | || ||||||| ||||| |||||||||||||||    
44144990 agagactgcaataatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaa 44144891  T
112 gttgagtaggaatcttcccctcataaccaccatttgagagatcaa-ggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 210  Q
    |||||| |||||||||||| ||||||||||||  ||||||||||| ||| |||||| |||||||| || |||||||||||||| |||||||||| |||||    
44144890 gttgagcaggaatcttcccatcataaccaccaactgagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtat 44144791  T
211 tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaat 291  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
44144790 tcaaataacttaggtctagatgtgttagatgttgcagcacagttattgaaggattgatttcaccactcaaatcatatgaat 44144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 75 - 494
Target Start/End: Complemental strand, 35899124 - 35898699
Alignment:
75 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 174  Q
    ||||||| ||||| ||||||   ||||||||||| ||| |||| |||||||||||| ||  |||||| |||||||||||||| |||||| ||||||||||    
35899124 ctgagatcaaggtattgcaacaatgagagattcctaagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctga 35899025  T
175 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 274  Q
    | || |||||||||||||| ||||||||||||||||||||| |||  ||||||| |||||| ||||||||||| ||||||||| |||| |||||||  ||    
35899024 aggagccaataaattttgggatttgaccactagtattcaaaaaaccaaggtctaaatatgtaagatgttgcaattcagttattaaagggttgattttgcc 35898925  T
275 actcaaata------atatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagtt 368  Q
     ||||||||       | |||| | || | ||||||  ||| || |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||    
35898924 tctcaaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcattt 35898825  T
369 ggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgc 468  Q
    ||||  || |||||||  |||||||| || || || ||| ||| ||||||||||||   |||||| || |||||||||||||||||||| || ||||| |    
35898824 ggactatcattccatgtagacaacataccgtactcgtcttgaaggccttgtttgaaaccgaggagagcatgtctctccctctctttgcagttggtatctc 35898725  T
469 cattaattatttttgagttgaaccca 494  Q
    |||||  ||||  |||||||||||||    
35898724 cattatctattgctgagttgaaccca 35898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 395 - 545
Target Start/End: Complemental strand, 44144664 - 44144514
Alignment:
395 gccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaaccca 494  Q
    |||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||  || ||  ||||||||||| |    
44144664 gccatagtcatcttgaacaccttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactttgtgtctacattctttgttgctgagttgaaccta 44144565  T
495 gcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagttt 545  Q
     ||||| |||| ||||||||||||||||| |||| ||||||| ||||||||    
44144564 tcaatggaggataacaccaacaatgcatgtaatgcaataatattatagttt 44144514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 11544676 - 11544933
Alignment:
12 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 111  Q
    ||||| ||||| || ||||||||||||||||||||||| |||  |||||  || |||||  | || |||| |||||||  ||| ||||||||||| ||||    
11544676 agagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaa 11544775  T
112 gttgagtag----gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactag 207  Q
    |||||| ||    |||||||| | | ||||  || ||||||||||| |||||||| ||| ||| | || || |||||||||||||| ||||||     |     
11544776 gttgagaaggaatgaatcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagccaataaattttgggatttgagtgaaaa 11544875  T
208 tattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggatt 265  Q
    || ||| |  ||||||||||| |||| |||||||||| ||||||||||||||||||||    
11544876 taatcatactactgaggtctaaatattttagatgttgtaactcagttattgaaggatt 11544933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 44612199 - 44612085
Alignment:
12 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 111  Q
    ||||| ||||| || ||||||||||| |||||||||||||||  ||||   || |||||    || |||| ||||||| |||||||||||||||||||||    
44612199 agagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaa 44612100  T
112 gttgagtaggaatct 126  Q
    |||||| ||||||||    
44612099 gttgagaaggaatct 44612085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 307 - 460
Target Start/End: Original strand, 11544990 - 11545143
Alignment:
307 tttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatc 406  Q
    ||| ||||||||| ||||| ||||||||  ||| |||||||||||| || ||||| |   || ||  ||  |||||||  ||||||||| |||| | |||    
11544990 tttgaacataacctgtttggttgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcgacaacatgtcatacttatc 11545089  T
407 tcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt 460  Q
    |  || |  ||||||||| ||||||||||| ||||||||||||||| |||||||    
11545090 ttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctgtgcactt 11545143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 545
Target Start/End: Original strand, 29228546 - 29229062
Alignment:
27 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 126  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
29228546 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29228645  T
127 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 226  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
29228646 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29228745  T
227 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatat------gaatcgtgtagatcaagcttttcaacataaccg 320  Q
    ||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| | |      |||   || ||||||||  ||| |||||||||     
29228746 tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataacca 29228845  T
321 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 420  Q
    ||||| |||||||||        || ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||    
29228846 gtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtt 29228937  T
421 tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgc 520  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||| || ||  || |||||||||| ||||| |||||||||| ||||||||    
29228938 tgaacctgagcagtgcttgtctctccctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggacaacactaacaatgc 29229037  T
521 atggaatgtaataatagtatagttt 545  Q
    ||| |||||| ||||| ||||||||    
29229038 atgaaatgtagtaatattatagttt 29229062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 545
Target Start/End: Original strand, 29341845 - 29342361
Alignment:
27 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 126  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
29341845 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29341944  T
127 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 226  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
29341945 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29342044  T
227 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatat------gaatcgtgtagatcaagcttttcaacataaccg 320  Q
    ||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| | |      |||   || ||||||||  ||| |||||||||     
29342045 tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataacca 29342144  T
321 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 420  Q
    ||||| |||||||||        || ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||    
29342145 gtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtt 29342236  T
421 tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgc 520  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||| || ||  || |||||||||| ||||| |||||||||| ||||||||    
29342237 tgaacctgagcagtgcttgtctctccctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggacaacactaacaatgc 29342336  T
521 atggaatgtaataatagtatagttt 545  Q
    ||| |||||| ||||| ||||||||    
29342337 atgaaatgtagtaatattatagttt 29342361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 297 - 526
Target Start/End: Original strand, 29508253 - 29508482
Alignment:
297 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 396  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||  || ||||  |||||||||||| |||||||||||    
29508253 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc 29508352  T
397 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 496  Q
    |||| |||||| ||| ||||| ||||||  |||||||||| | ||||||| ||||||  |||||  | ||  ||||    |||   |||||||||||| |    
29508353 catactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctcttcacacttcatttcatcattctccattgcagagttgaacccaac 29508452  T
497 aatgaaggacaacaccaacaatgcatggaa 526  Q
    ||||||| | ||||| ||||||||||||||    
29508453 aatgaagaataacacaaacaatgcatggaa 29508482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
30 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaag 112  Q
    |||||||| |||||||| || |||| |||||  || ||||||  |||||||| |||||||||||||||||||||||| |||||    
29508115 agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 29507536 - 29507624
Alignment:
27 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    |||||||||  |||||| |||||||||| |||||  || |||||  | ||||||| ||||||||| |||||||||||||| ||||||||    
29507536 gaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 20761969 - 20762047
Alignment:
379 tccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgca 457  Q
    |||||| ||| | |||||||||||||||| | | ||||||||||||| | | |||||| | ||||||||||||||||||    
20761969 tccatgtggaaagcatgccataatcatcttggaggccttgtttgaaccttaagagtgcttctctctccctctctttgca 20762047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
30 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
29507611 agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
30 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
29507683 agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
77 gagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    ||||| |||||||||||||||||||||||| ||||||||    
29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
77 gagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    ||||| |||||||||||||||||||||||| ||||||||    
29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
77 gagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    ||||| |||||||||||||||||||||||| ||||||||    
29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
30 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
29507755 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
30 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 115  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
29507971 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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