View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_22 (Length: 518)
Name: NF18068_low_22
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_22 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 298 - 518
Target Start/End: Complemental strand, 45406790 - 45406570
Alignment:
| Q |
298 |
ctctgcatcaaattaaacatgtatatttagaagcaacctaaccaatttaaacaattcctgtcatgccaagagaacttagctgtatcattgtggcctttgg |
397 |
Q |
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| T |
45406790 |
ctctgcatcaaacataacatgtatttttagaagcaacctaaccaatttaaacaattcctgtcatgccaagagaacttagctgtatcattgtggcctttgg |
45406691 |
T |
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| Q |
398 |
gatcaaagatggcatttacaatactttatatctacgattccaaaaggatatatatattataacaaatagcaaatttaaattaagacaacaagaggcaggt |
497 |
Q |
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| T |
45406690 |
gatcaaagatggcatttacaatactttatatctacgattccaaaaggatatatatattataacaaataacaaatttaaattaagacaacaagaggcaggt |
45406591 |
T |
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| Q |
498 |
catggtgatatattcttggac |
518 |
Q |
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| T |
45406590 |
catggtgatatactcttggac |
45406570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 45407040 - 45406953
Alignment:
| Q |
23 |
taactaataagtattgcaaaaaagctactagtatttttgttacgttataggtacgaagttttttaacatgctgaacacataaggttcc |
110 |
Q |
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| T |
45407040 |
taactaataagtattgcaaaaaagctactagtatttttgttacgttataggtacgaagttttttaacatgctgaacacataaggttcc |
45406953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 45406877 - 45406796
Alignment:
| Q |
186 |
tgttttggattactgctatggtatggtatcaaagtgtccaactatcataccgagt----agccagtgtgaataaccaactct |
263 |
Q |
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| T |
45406877 |
tgttttggattactgctatggtatggtatcaaagtgtccaactagcatactgagtagccagccagtgtgaataaccaactct |
45406796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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