View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_25 (Length: 479)
Name: NF18068_low_25
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 463
Target Start/End: Complemental strand, 43611894 - 43611435
Alignment:
| Q |
4 |
agcaaaggtggaagctactgagagcagcagttgatagtggcggtttattcagtttgccccaaatttcttcttcattcttcaactttttcaaacagggggc |
103 |
Q |
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| T |
43611894 |
agcaaaggtggaagctactgagagtagcagttgatagtggtggtttattcagtttgcccaaattttcttctgcattctgcacctttctcaatcaagagtc |
43611795 |
T |
|
| Q |
104 |
ggggattcaaccaaggnnnnnnnntattaacatattttatagcaacaacgtggttttagtacaacacatatcttaaaatggtatcaaagtctatccaaga |
203 |
Q |
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|| |||||||||| | ||||||||||||| ||||||||| |||| ||| ||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
43611794 |
ggagattcaaccaggtaaacaaattattaacatatttgatagcaacatcgtgatttaagtgcaacacatattttaaaatggtatcaaagtctatccaaga |
43611695 |
T |
|
| Q |
204 |
attgtttgatcatctgctatcaggtcacagttaatggtcgagatttttaattgtattatagcacctatctaatctaagttgtcctatctcacatcattaa |
303 |
Q |
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| T |
43611694 |
attgtttgatcatctgctatcaggtcacagttaatggtcgagatttttaattgtattatagcacctatctaatctaagttgtcctatctcacatcattaa |
43611595 |
T |
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| Q |
304 |
taattgggaaattaataactttaatccaagtttgcaagtagatttccatgtctagatatgaattttcataataatttaatgcatgtttgcaagtagattt |
403 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611594 |
taactgggaaattaataactttaatccaagtttgcaagtagatttccatgtctagatatgaattttcataataatttaatgcatgtttgcaagtagattt |
43611495 |
T |
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| Q |
404 |
tgatgtatagatatgaattcttacaatctttttgaattcattgcagcttttgcttggtta |
463 |
Q |
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| T |
43611494 |
tgatgtatagatatgaattcttacaatctttttgaattcattgcagcttttgcttggtta |
43611435 |
T |
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