View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_27 (Length: 461)
Name: NF18068_low_27
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Original strand, 47364421 - 47364876
Alignment:
| Q |
6 |
gacatcatcactatgcttttttcaaagcacctaggtctcataactatgaatcttctccttttttaaagagttaatggaaatttcatatgatggataggat |
105 |
Q |
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| T |
47364421 |
gacatcatcactatgcttttttcaaagcacctaggtctcataactatgaatcttctccttttttaaagagtttatggaaatttcatatgatggataggat |
47364520 |
T |
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| Q |
106 |
aggtaatcaattttggatgttggatctcactcaatctacatcacatgcatcattattttaattctttgaactgtgtgcactattaaaattactgttaaga |
205 |
Q |
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| T |
47364521 |
aggtaatcaattttggatgttggttctcactcaatctacatcacatgcatcattattttaattctttgaactgtgtgcactattaaaattactgttaaga |
47364620 |
T |
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| Q |
206 |
gtaaagttctcataacgtgcatgtttttggtctttgcaatgactacttttgcctataagtagctattatttctatgtcaagttcagcaaattgttcttcc |
305 |
Q |
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| T |
47364621 |
gtaaagttctcataacgtgcatgtttttggtctttgcaacgactacttttgcctataagtagctattatttctatgtcaagttcagcaaattgttcttcc |
47364720 |
T |
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| Q |
306 |
atttacagacaagtctaatgtctaagtttgcacctaaccattacttaaatcagttaaatgtctatgtgcaaaccaaattctaagttgaatccttctannn |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
47364721 |
atttacagacaagtctaatgtctaagtttgcacctaaccattacttaaatcagttaaatgtctatttgcaaaccaaattctaagttgaaaccttctattt |
47364820 |
T |
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| Q |
406 |
nnnncacatgaagatatttgtaaatttgtaaatcatgcagaaaaagagaagactcc |
461 |
Q |
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| T |
47364821 |
ttttcacatgaagatatttgtaaatttgtaattcatgcagaaaaagagaagactcc |
47364876 |
T |
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