View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_28 (Length: 459)
Name: NF18068_low_28
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 16442349 - 16442564
Alignment:
| Q |
16 |
atcgttgtacacaatggtgttaaaatcaataaataaaaccatagttttggttcgaaactttatctcaatgattcgtcaaatggttggaacaccattataa |
115 |
Q |
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| T |
16442349 |
atcgttgtacacaaaggtgttaaaatcaacaaataaaaccatagttttggttcgaaactttatctcaatgattcgtcaaatggttggaacaccattataa |
16442448 |
T |
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| Q |
116 |
aa-aacaaaattaatcatcccaatcataaaggttgggatccaactccaattaaacattttgatttgattcagcaactacaacctgaataccatctttgaa |
214 |
Q |
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| T |
16442449 |
aaaaacaaaattaatcatcccaatcataaaggtttggatccaactccaattagacagtttgatttgattcagcaactacaacctgaataccatctttgaa |
16442548 |
T |
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| Q |
215 |
aataattctatataat |
230 |
Q |
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| T |
16442549 |
aataattctatataat |
16442564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 16442689 - 16442778
Alignment:
| Q |
354 |
aaaagaggatacaaatcagtcgcaaaatccattaagcctagattattgaatccgtctcaatttgccgcggaatacagctgtggcaaagat |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16442689 |
aaaagaggatacaaatcagtcgcaaaatccattaagcctagattattgaatccgtctcaatttgcggcggaatacagctgtggcaaagat |
16442778 |
T |
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