View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_low_29 (Length: 455)

Name: NF18068_low_29
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_low_29
NF18068_low_29
[»] chr2 (6 HSPs)
chr2 (13-433)||(36683334-36683744)
chr2 (163-230)||(37480075-37480142)
chr2 (163-229)||(41908648-41908714)
chr2 (163-284)||(30808602-30808723)
chr2 (208-284)||(11251132-11251208)
chr2 (164-224)||(16918593-16918653)
[»] chr7 (8 HSPs)
chr7 (163-244)||(5273585-5273666)
chr7 (162-241)||(31835191-31835270)
chr7 (163-236)||(5579237-5579310)
chr7 (163-224)||(38374614-38374675)
chr7 (163-218)||(48125195-48125250)
chr7 (166-255)||(20952133-20952222)
chr7 (165-238)||(29385744-29385817)
chr7 (163-243)||(43215184-43215264)
[»] chr8 (3 HSPs)
chr8 (163-229)||(18897166-18897232)
chr8 (162-230)||(26688864-26688932)
chr8 (163-238)||(11793522-11793597)
[»] chr4 (3 HSPs)
chr4 (162-284)||(8714679-8714800)
chr4 (163-247)||(5795401-5795485)
chr4 (226-272)||(32654264-32654310)
[»] chr6 (3 HSPs)
chr6 (184-284)||(28363958-28364058)
chr6 (184-243)||(20863396-20863455)
chr6 (163-243)||(33549104-33549184)
[»] chr5 (4 HSPs)
chr5 (163-270)||(14495774-14495881)
chr5 (235-284)||(18669255-18669304)
chr5 (166-259)||(21086717-21086810)
chr5 (163-244)||(29692381-29692462)
[»] chr1 (7 HSPs)
chr1 (163-238)||(37046985-37047059)
chr1 (163-234)||(41508831-41508902)
chr1 (162-244)||(19940867-19940949)
chr1 (162-230)||(19528336-19528404)
chr1 (166-247)||(9964441-9964522)
chr1 (163-244)||(51814494-51814575)
chr1 (184-244)||(51281372-51281432)
[»] chr3 (7 HSPs)
chr3 (208-274)||(32651403-32651469)
chr3 (163-217)||(47079701-47079755)
chr3 (163-255)||(31520589-31520681)
chr3 (163-257)||(36720381-36720475)
chr3 (184-238)||(44069779-44069833)
chr3 (194-243)||(15048057-15048106)
chr3 (163-223)||(40286873-40286933)
[»] scaffold0012 (1 HSPs)
scaffold0012 (164-255)||(240870-240960)
[»] scaffold0016 (1 HSPs)
scaffold0016 (163-221)||(77620-77678)
[»] scaffold0258 (1 HSPs)
scaffold0258 (162-243)||(15319-15400)
[»] scaffold0291 (1 HSPs)
scaffold0291 (163-247)||(2462-2546)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 36683744 - 36683334
Alignment:
Q  13 atggcacaaataaaactctagaattgaaaatacctaaatcctaaaccaagtactaatagtaatagtaatatatttgttcttcatcttcttcattatttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| ||||| ||||| |||||||||    
T  36683744 atggcacaaataaaactctagaattgaaaatacctaaatcctaaaccaagtactaatagtaata------tatttgttattcat-ttctttattatttct 36683652  T
Q  113 tctcaaatacatcaannnnnnnnnnnnnnnnnnnaaaccatcgaaggtgcaacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgc 212  Q
    |||||||||||||||                   |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||  ||||    
T  36683651 tctcaaatacatcaatttttttctttttgattttaaaccatcgaaggtgcaacccacttgggttagtctgatggtgttggcttgagatcttaga--gtgc 36683554  T
Q  213 tcctcctcaaggcctcagatttgattatctccagtatcaatttagatagactagtttaacttatttaaaaaaccatcgaagatgttaatgatgattaaaa 312  Q
    ||||||| || || |||||||||||||||| | ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  36683553 tcctccttaaagcttcagatttgattatcttcggtatcaatttagatatactaatttaacttattaaaaaaaccatcgaaggtgttaatgatgattaaaa 36683454  T
Q  313 attttatcatttgttttttgggaagtttttatcgttcttcaacacatgtttctttattgcaatttgaacattaggaggccacaatataactttaggtgta 412  Q
     ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36683453 tttttatcatttgttttt-gggaagtttttatcgttcttcaactcatgtttctttattgcaatttgaacattaggagaccacaatataactttaggtgta 36683355  T
Q  413 tggagtcttttatgaccacca 433  Q
    |||||||||||||||||||||    
T  36683354 tggagtcttttatgaccacca 36683334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 37480075 - 37480142
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcag 230  Q
    |||||||||||||| | ||| |||| |||| |||||| || ||| ||||||||||||||||| |||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcag 37480142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 41908714 - 41908648
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctca 229  Q
    |||||||||||||| | ||| |||||| |||||| || ||| || ||||||||||||||||| ||||    
T  41908714 aacccacttgggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctca 41908648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 30808723 - 30808602
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagataga 262  Q
    |||||||||||||| ||||| || | |||| ||| || || ||||| ||||||||||||||| ||||| || |||| ||| | ||| ||| |||| | ||    
T  30808723 aacccacttgggttggtctggtgatattggcttgagacctgagaatatgctcctcctcaaggtctcagtttcgattctcttcggtaccaacttaggtgga 30808624  T
Q  263 ctagtttaacttatttaaaaaa 284  Q
    ||| |||| ||| || ||||||    
T  30808623 ctaatttagctttttcaaaaaa 30808602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 11251132 - 11251208
Alignment:
Q  208 tgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagatagactagtttaacttatttaaaaaa 284  Q
    ||||||||||||||||| ||||| ||||||| ||||  || ||||||||| |   ||| ||||||||||| ||||||    
T  11251132 tgtgctcctcctcaaggtctcaggtttgattctctctggtgtcaatttaggtgtgctaatttaacttattcaaaaaa 11251208  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 16918653 - 16918593
Alignment:
Q  164 acccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaagg 224  Q
    ||||||||||||| | ||  |||| ||||||||||||||  || |||||||||||||||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaagg 16918593  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 5273666 - 5273585
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctcc 244  Q
    |||||||||||||| | ||| ||||||||| |||||| |||||| ||||||||||||||||| || || ||||||| |||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggtttgattgtctcc 5273585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 31835191 - 31835270
Alignment:
Q  162 caacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatc 241  Q
    ||||||||||||||| | ||| ||||||||| |||||  ||| || ||||||||||||||||| ||||| || |||||||    
T  31835191 caacccacttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtctcaggttcgattatc 31835270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 5579310 - 5579237
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttga 236  Q
    ||||||||||||||   ||| ||||||||| |||||| ||| || ||||||||||||||||| ||||| |||||    
T  5579310 aacccacttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtttga 5579237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 38374675 - 38374614
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaagg 224  Q
    |||||||||||||| |  || ||||||||| |||||| |||||| |||||||||||||||||    
T  38374675 aacccacttgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaagg 38374614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 48125250 - 48125195
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcc 218  Q
    |||||||||||||| ||||| ||||||||| |||||| ||| || |||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctcc 48125195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 20952222 - 20952133
Alignment:
Q  166 ccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaattt 255  Q
    |||||||||||   ||| |||| ||||||||||| ||  || |||||||||||||||   |||||||| |||||||||| || |||||||    
T  20952222 ccacttgggttgacctgatggtattggtttgggacctgggagtgtgctcctcctcaaaatctcagattcgattatctcccgtgtcaattt 20952133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 29385817 - 29385744
Alignment:
Q  165 cccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgatt 238  Q
    |||||||||||| | | | ||||||||| ||||||  || || ||||||||||||||||| ||||| |||||||    
T  29385817 cccacttgggttggccggatggtgttggcttgggactttggagtgtgctcctcctcaaggtctcaggtttgatt 29385744  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 43215184 - 43215264
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctc 243  Q
    |||||||||||||| ||||  |||| |||| |||||| ||  || ||||||||||||||||| ||||| || |||| ||||    
T  43215184 aacccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctc 43215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 18897166 - 18897232
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctca 229  Q
    |||||||||||||| | ||  |||||||||||||||| |||||| ||||||||||||||||| ||||    
T  18897166 aacccacttgggttggcctagtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctca 18897232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 26688864 - 26688932
Alignment:
Q  162 caacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcag 230  Q
    ||||||||||||||| | ||| ||||||||| |||||| ||| || ||||||||||||||||| |||||    
T  26688864 caacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcag 26688932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 11793597 - 11793522
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgatt 238  Q
    |||||||||||||| ||||  ||||||| | |||||| ||| || ||||||||||||||||| || || |||||||    
T  11793597 aacccacttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtcttaggtttgatt 11793522  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 8714679 - 8714800
Alignment:
Q  162 caacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagatag 261  Q
    ||||||||||||||||  ||  |||| |||||||||||||| |||  ||| ||||||||||||  |||||||||||| ||| ||||  |||||||| |      
T  8714679 caacccacttgggttac-ctagtggtattggtttgggatctgagagcgtgttcctcctcaaggtttcagatttgattctcttcagtgccaatttaggtga 8714777  T
Q  262 actagtttaacttatttaaaaaa 284  Q
    ||||||||||||| || ||||||    
T  8714778 actagtttaacttcttcaaaaaa 8714800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 5795485 - 5795401
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagt 247  Q
    |||||||||||||| ||||| ||||||||  |||| | ||| || | ||||||||||||||| ||||| ||||||| || |||||    
T  5795485 aacccacttgggttggtctggtggtgttgacttggcaccttggagtatgctcctcctcaaggtctcaggtttgattctccccagt 5795401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 32654264 - 32654310
Alignment:
Q  226 ctcagatttgattatctccagtatcaatttagatagactagtttaac 272  Q
    |||| ||| |||||||| |||||||||||||| ||||||||||||||    
T  32654264 ctcatattcgattatcttcagtatcaatttaggtagactagtttaac 32654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 28363958 - 28364058
Alignment:
Q  184 tggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagatagactagtttaacttatttaaaaa 283  Q
    |||| ||||||||||||||  || ||||||||||||||||| |||||||| |||||||||  || ||||||| ||| | ||| ||||| || || |||||    
T  28363958 tggtattggtttgggatctgcgagtgtgctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaaa 28364057  T
Q  284 a 284  Q
    |    
T  28364058 a 28364058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 20863396 - 20863455
Alignment:
Q  184 tggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctc 243  Q
    ||||||||| ||||||  || || ||||||||||||||||| ||||||||||||| ||||    
T  20863396 tggtgttggcttgggactttggagtgtgctcctcctcaaggtctcagatttgattctctc 20863455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 33549104 - 33549184
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctc 243  Q
    |||||||||||||| ||||| |||| |||| |||||| ||  || ||||||||||||| ||| ||||| || |||| ||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 33549184  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 14495881 - 14495774
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagataga 262  Q
    |||||| ||||||| ||||| |||| |||  |||||||||  || ||||||||||||| ||| ||||||||||||| |||||  |  |||||||||| |     
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctctccgatgccaatttagatggg 14495782  T
Q  263 ctagttta 270  Q
    ||||||||    
T  14495781 ctagttta 14495774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 18669304 - 18669255
Alignment:
Q  235 gattatctccagtatcaatttagatagactagtttaacttatttaaaaaa 284  Q
    ||||||||||||| ||||||| ||| ||||||||| ||||||| ||||||    
T  18669304 gattatctccagtgtcaatttcgattgactagtttgacttattaaaaaaa 18669255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 21086717 - 21086810
Alignment:
Q  166 ccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagat 259  Q
    ||||||| ||| ||||| |||| ||| ||| ||||||   | ||||||||||||||||  |||||||| |||||||||  || |||||||||||    
T  21086717 ccacttgagttggtctgatggtattgatttaggatctggcagtgtgctcctcctcaagatctcagattcgattatctctggtgtcaatttagat 21086810  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 29692462 - 29692381
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctcc 244  Q
    |||||| ||||||| ||||| |||| |||| |||||||||  || ||||||||||||||| | ||||| ||| ||| |||||    
T  29692462 aacccatttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctcaaagtctcaggtttaattctctcc 29692381  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 37046985 - 37047059
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgatt 238  Q
    |||||||||||||| ||||| ||||||||| |||||| ||| || ||||||||| ||||||| ||||| |||||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggtttgatt 37047059  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 41508831 - 41508902
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagattt 234  Q
    |||||||||||||| | ||| ||||  |||||||||||||  || ||||||||||||||||| |||||||||    
T  41508831 aacccacttgggttggcctggtggtactggtttgggatctgggagtgtgctcctcctcaaggtctcagattt 41508902  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 19940949 - 19940867
Alignment:
Q  162 caacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctcc 244  Q
    ||||||||||||||| ||||| ||||||| | |||||  ||| || |||||||||||| |||| ||||| ||||||| |||||    
T  19940949 caacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctctcc 19940867  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 19528404 - 19528336
Alignment:
Q  162 caacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcag 230  Q
    ||||||||||||||| | ||| |||| |||| |||||||||  || ||||||||||||||||| |||||    
T  19528404 caacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcag 19528336  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 9964441 - 9964522
Alignment:
Q  166 ccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagt 247  Q
    ||||||||||||| ||| || | |||  |||||||||  || ||||||| ||||||| | ||||| ||||||||||||||||    
T  9964441 ccacttgggttagcctgatgttattgacttgggatctgggagtgtgctcttcctcaatgtctcaggtttgattatctccagt 9964522  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 51814494 - 51814575
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctcc 244  Q
    |||||||||||||| | ||| |||| |||  ||| ||||| ||| ||||||||||||||||| ||||| || |||| |||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctcc 51814575  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 51281372 - 51281432
Alignment:
Q  184 tggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctcc 244  Q
    |||||||| ||||||| || | | ||||||||||||||||| ||||| ||||||| |||||    
T  51281372 tggtgttgttttgggacctcaaagtgtgctcctcctcaaggtctcaggtttgattctctcc 51281432  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 32651469 - 32651403
Alignment:
Q  208 tgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttagatagactagtttaactt 274  Q
    ||||||||||||||||  |||||||| |||| |||| ||| ||||||||||| | ||||||||||||    
T  32651469 tgtgctcctcctcaagatctcagattcgattctctctagtgtcaatttagatgggctagtttaactt 32651403  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 47079701 - 47079755
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctc 217  Q
    |||||||||||||| ||||| ||||||||| |||||||||| ||||||| |||||    
T  47079701 aacccacttgggttggtctggtggtgttggcttgggatcttggaatgtgttcctc 47079755  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 31520681 - 31520589
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaattt 255  Q
    |||||||||||||| | ||| |||  |||| |||||||||  || ||||||||||||| ||| || || ||||||| |||||||| |||||||    
T  31520681 aacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaattt 31520589  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 36720381 - 36720475
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaatttag 257  Q
    |||||||||||||| ||||| |||| |||| ||||||| |  || ||||||||||||| |||  |||| || |||| |||| ||| |||||||||    
T  36720381 aacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttag 36720475  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 44069779 - 44069833
Alignment:
Q  184 tggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgatt 238  Q
    ||||||||| ||| |||||| || ||||||||||||||||| ||||| |||||||    
T  44069779 tggtgttggcttgagatcttggagtgtgctcctcctcaaggtctcaggtttgatt 44069833  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 15048106 - 15048057
Alignment:
Q  194 ttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctc 243  Q
    |||||||||  |||||||||||||||||||| ||||| || |||||||||    
T  15048106 ttgggatctgggaatgtgctcctcctcaaggtctcaggttcgattatctc 15048057  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 40286933 - 40286873
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaag 223  Q
    |||||||||||||| ||||| ||||||| | ||| |||||| || |||| |||||||||||    
T  40286933 aacccacttgggttggtctggtggtgttcgcttgagatcttggagtgtggtcctcctcaag 40286873  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 240960 - 240870
Alignment:
Q  164 acccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagtatcaattt 255  Q
    |||||||| |||| ||||| |||||||||||||||||||| || | ||||||| ||||||| ||||  ||||||| ||| || | |||||||    
T  240960 acccactttggttggtctgatggtgttggtttgggatcttggagtatgctcct-ctcaaggtctcatgtttgattttctacaatttcaattt 240870  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 77620 - 77678
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctca 221  Q
    ||||||||||| || ||||| ||||||||||||||||  || || ||||||||||||||    
T  77620 aacccacttggattggtctgatggtgttggtttgggactttggagtgtgctcctcctca 77678  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 15400 - 15319
Alignment:
Q  162 caacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctc 243  Q
    ||||||||||||||| ||||| |||| |||| |||||| ||  || ||||||||||||| ||| ||||| || |||| ||||    
T  15400 caacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 15319  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 2546 - 2462
Alignment:
Q  163 aacccacttgggttagtctgttggtgttggtttgggatcttagaatgtgctcctcctcaaggcctcagatttgattatctccagt 247  Q
    |||||| ||||||| ||| | |||| ||||||| ||||||  || ||||||||||||||||| ||||| || |||| || |||||    
T  2546 aacccatttgggttggtccggtggtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttcgattctccccagt 2462  T

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