View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_30 (Length: 451)
Name: NF18068_low_30
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 33718345 - 33717920
Alignment:
| Q |
19 |
tttctctgggcgaggttgcttttatgagtatgttgcaacttctgagatcagtaatattttttggacaaggatatcaatgatataagttgatgaaaatgaa |
118 |
Q |
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| T |
33718345 |
tttctctgggcgaggttgcttttatgagtatgttgcaacttctgagatcagtaatattttttggacaaggatatcaatgatataagttgatgaaaatgaa |
33718246 |
T |
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| Q |
119 |
agatttgatggttttactacatgtggtgcggctaactttttaatatttattgttaaactcatgttcttctggattttctatttgactcatttcataactt |
218 |
Q |
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| T |
33718245 |
agatttgatggttttactacatgtggtgcggctaactttttaatatttattgttaaactcatgttcttctggattttctatttgactcatttcataactt |
33718146 |
T |
|
| Q |
219 |
gatgagattgacattatcttccatccaccgactcttggtttatatttgatcttaagatgtggagcattgacacataatgcaaagtcatgcatggagaggc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718145 |
gatgagattgacattatcttccatccaccgactcttggtttatatttgatcttaagatgtggagcattgacacataatgcaaagtcatgcatggagaggc |
33718046 |
T |
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| Q |
319 |
ctcaaaggataggagcaagatggaccagcaagcatgttgctcctgatgagaagatagaaacatttgaactcgattacgatggcaacctagatcgatcaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718045 |
ctcaaaggataggagcaagatggaccagcaagcatgttgctcctgatgagaagatagaaacatttgaactcgattacgatggcaacctagatcgatcaaa |
33717946 |
T |
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| Q |
419 |
tggttataatacagcaacctatgcta |
444 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33717945 |
tggttataatacagcaacctatgcta |
33717920 |
T |
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