View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_33 (Length: 421)
Name: NF18068_low_33
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 40961126 - 40960730
Alignment:
| Q |
8 |
cagcacagacaccgcatcacaagaagcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaa |
107 |
Q |
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| T |
40961126 |
cagcacagacaccgcatcacaagaggcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaa |
40961027 |
T |
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| Q |
108 |
agtgcattagatgagtttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcgcgaataatatccctt |
207 |
Q |
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| T |
40961026 |
agtgcattagatgagtttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcacgaataatatccctt |
40960927 |
T |
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| Q |
208 |
acacccactttacgctctgtgcaaagtttgcaactagcatctgtcatctgtttcacagaagaaaagctaacagttagtcgataatattcacacaatttaa |
307 |
Q |
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| T |
40960926 |
acacccactttacgctctgtgcaaagtttgcaactagcatctgtcatctgtttcacagaagaaaagctaacagttagtcgataatattcacacaatttaa |
40960827 |
T |
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| Q |
308 |
taggtaacataagattattggagtggagcaaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaacct |
404 |
Q |
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| T |
40960826 |
taggtaacataagattattggagtggagcaaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaacct |
40960730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 40947931 - 40947542
Alignment:
| Q |
9 |
agcacagacaccgcatcacaagaagcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaa |
108 |
Q |
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| T |
40947931 |
agcacagacaccgcatcacgagaggcagaccaggaatgaccacaagctatgcattccagctgaacaagcagagcaaaaattaaa-ccgaagtcacaaaaa |
40947833 |
T |
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| Q |
109 |
gtgcattagatgagtttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcgcgaataatatccctta |
208 |
Q |
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| T |
40947832 |
ctacaggagatgaatttg---atatt--tgaaatatcagtaaagcattaaggcgctgaccatatatcggtcagcatatcctgcacggataatatccctca |
40947738 |
T |
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| Q |
209 |
cacccactttacgctctgtgcaaagtttgcaactagcatctgtcatctgtttcac-agaagaaaagctaacagttagtcgataatattcacacaatttaa |
307 |
Q |
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| T |
40947737 |
cgccaactttttgctcatcgcaaattttgcagcgagcatctgtcatctgtttcaccagtagaaaagccaacattcagtaaataatattcacacaatttaa |
40947638 |
T |
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| Q |
308 |
taggtaacataagattattggagtggagcaaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtcaaacc |
403 |
Q |
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| T |
40947637 |
cagataacataaaattgttgggatggagcaaaaagtgacctgcatgtgttgtggctcatcgggctcatccttggatatttcctcagcagtcaaacc |
40947542 |
T |
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