View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_low_34 (Length: 420)
Name: NF18068_low_34
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 44569058 - 44568671
Alignment:
| Q |
16 |
atactcgattcagacatgggaaaacctttggaatctatattctgatcagcccatactctcacacacagctaccttttggataagatttaaatattctaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44569058 |
atactcgattcagacatgggaaaacctttggaatctacattctgatcagcccatactctcacacacagctaccttttggataagatttaaatattctaat |
44568959 |
T |
|
| Q |
116 |
gcaaacttacaattcattgttgaagaagacaaacatgtcatgctcccttaggtttaaagttctacatcagatttaacatgtcaattttggcattaacata |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44568958 |
gcaaacttacaattcattgttggagaagacaaacatgtcatgctcccttaggtttaaagttctacatcagatttaacatgtcaattttggcatcaacata |
44568859 |
T |
|
| Q |
216 |
actaaaatcacacttgacagaagatgaannnnnnnacactgaatccaacacatgcttggtgtgagtaatttcttacagagcttttcgcaaatcaaacaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44568858 |
actaaaatcacacttgacagaagatgaatttttttacactgaatccaacacatgcttggtgtgagtaatttcttacagagcttttcgcaaatcaaacaat |
44568759 |
T |
|
| Q |
316 |
actagttttcaagtgttcatgcaacacatcgactacgtacgatggaataataggttgatcagaataaatatgacaaacaaaaatttta |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44568758 |
actagttttcaagtgttcatgtaacacatcaactacgtacgatggaataataggttgatcagaataaatatgacaaacaaaaatttta |
44568671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University