View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_37 (Length: 418)
Name: NF18068_low_37
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 36871501 - 36871096
Alignment:
| Q |
13 |
aaatttgactgcaagtaattcaatttgccattgcaaaggatccatacacaagatttggcataagtcatatattctaatctgaccaaaaatattcgacact |
112 |
Q |
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| T |
36871501 |
aaatttgactgcaagtaattcaatttgccattgcaaaggatccatacacaagatttgacataagtcatatattctaatctgaccaaaaatattcgacact |
36871402 |
T |
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| Q |
113 |
aatatgaaaaatcatcttgggatacggttactatttttagcatttatatctctcaagtgcaaaaaacaggacactttatctgacactattttgtacaaac |
212 |
Q |
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| T |
36871401 |
aatatgaaaaatcatcttgggatacggttactatttttagcatttatatctctcaagtgcaaaaaacaggacactttatctgacactattttgtacaaac |
36871302 |
T |
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| Q |
213 |
aggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctgggag |
312 |
Q |
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| T |
36871301 |
aggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctgggag |
36871202 |
T |
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| Q |
313 |
tgatgctgtcatttaccctgctccagaattgttggaaaaacagacagaggaaaaacacaatgtgtacccaaaatttgtgtttgaagagtacatgaagatc |
412 |
Q |
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| T |
36871201 |
tgatgctgtcatttaccctgctccagaattgttggaaaaacagacagaggaaaaacacaatgtgtacccaaaatttgtgtttgaagagtacatgaagatc |
36871102 |
T |
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| Q |
413 |
tgtgct |
418 |
Q |
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| T |
36871101 |
tatgct |
36871096 |
T |
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Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 211 - 330
Target Start/End: Original strand, 37629765 - 37629884
Alignment:
| Q |
211 |
acaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctggg |
310 |
Q |
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| T |
37629765 |
acaggtaataacaaatggcaagtacaaaagtgtggaacaccgtgtggtagcacaaactgatggaacaagaatgtctatagcctcattctacaaccctggt |
37629864 |
T |
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| Q |
311 |
agtgatgctgtcatttaccc |
330 |
Q |
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| T |
37629865 |
agtgatgctgttatctaccc |
37629884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 8927603 - 8927715
Alignment:
| Q |
209 |
aaacaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctg |
308 |
Q |
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| T |
8927603 |
aaacaggtgataacaaatgggaagtacaagagtgtgatgcacagagtaattgctcaaacagatggtgctagaatgtccatagcttcattctacaatccag |
8927702 |
T |
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| Q |
309 |
ggagtgatgctgt |
321 |
Q |
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| T |
8927703 |
ggaatgatgctgt |
8927715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 55528393 - 55528466
Alignment:
| Q |
224 |
aatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcatt |
297 |
Q |
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| T |
55528393 |
aatggcaaatacaagagtgtgttgcaccgtgtaattgctcaaacagatgggaaaagaatgtccatagcttcatt |
55528466 |
T |
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