View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_4 (Length: 923)
Name: NF18068_low_4
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 693; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 94 - 910
Target Start/End: Complemental strand, 5233902 - 5233084
Alignment:
| Q |
94 |
gtgattttatagtcggattttgtcccagagatgttgagcaatgtaaactccattaacaatctctcgcatttcctctctttctccctttgaagtttcttcc |
193 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233902 |
gtgattttattgtcggattttgtcccagagatgttgagcaatgtaaactccgttaacaatctctcgcatttcctctctttctccctttgaagtttcttcc |
5233803 |
T |
|
| Q |
194 |
attttttcttgcattatcgattatgattttactcaattgtttctgtgagcttttgcaattgtgt--tcattgannnnnnnncattcattgaatcttgatt |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
5233802 |
attttttcttgcattatcgattatgattttactcaattgtttctgtgagcttttgcaattgtgtgttcattgattttttttcattcattgaatcttgatt |
5233703 |
T |
|
| Q |
292 |
aacaaagtcacaacatttatgtaagatatgttgattgtgatgtaataagacaaattttcaaaagccatttgcaagcaactttcatccctctcaatttgtt |
391 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233702 |
aacaaagtcacaacatttatgtaagatttgttgattgtgatgtaataagacaaattttcaaaagccatttgcaagcaactttcatccctctcaatttgtt |
5233603 |
T |
|
| Q |
392 |
ctttacatgattccaatgtaaagagaaacaaatttatttatggcaaaatggagcaataaatagtgctcaatcttctcagttacaagctctataattcatg |
491 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233602 |
ctttacatgattccaatgtaaagagaaacaaatttatttatggcaaaatggagcaataaatagtgctcaatcttctcagttacaagctctataattcatg |
5233503 |
T |
|
| Q |
492 |
gaacaatattcaccaaaatagtttggctttgtaaagtagtagtagtataaattatacaacatctctgcatccaatcttttggtgtaaacttgaactacca |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233502 |
gaacaatattcaccaaaatagtttggctttgtaaagtagtagta---taaattatacaacatctctgcatccaatcttttggtgtaaacttgaactacca |
5233406 |
T |
|
| Q |
592 |
gaaaaagatggagcatcgatgttaaatatgaaacactttacacacgtgaatataatgataaaatttaaaccatattaatttggtaatttggtagaatcaa |
691 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233405 |
gaaaaagatggagcatcaatgttaaatatgaaacattttacacacgtgaatataataataaaatttaaaccatattaatttggtaatttggtagaatcaa |
5233306 |
T |
|
| Q |
692 |
ataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatg |
791 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233305 |
ataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatg |
5233206 |
T |
|
| Q |
792 |
accgaggaatatgatacctatccaaagatt---nnnnnnnnnnnnnnttactctcataatcttcgattacttacatcattattgtaaagtaccacgttat |
888 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233205 |
accgaggaatatgatacctatccaaagatttaaaaaaaaaaaaaaaattactctcataatcttcgattacttacatcattattgtaaagtaccacgttat |
5233106 |
T |
|
| Q |
889 |
atgaaatcttaccatttctgtg |
910 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5233105 |
atgaaatcttaccatttctgtg |
5233084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 5233957 - 5233879
Alignment:
| Q |
18 |
atttcatagttgaatcatacatgaaatttaaggtgtaactctcatat---tcatagtgattttattgtcggattttgtc |
93 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5233957 |
atttcatagttgaatcatacttgaaatttaaggtgtaactctcatattcatcatagtgattttattgtcggattttgtc |
5233879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 686 - 819
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
686 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
785 |
Q |
| |
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|||||||| | || |||| ||||||||||||||| ||||||||| |||||||| |||||||||||||| | ||||||||||||||||| || | ||| |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
|
| Q |
786 |
accatgaccgaggaatatgatacctatccaaaga |
819 |
Q |
| |
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|||||| ||||||||||||||||| || ||||| |
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| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 430
Target Start/End: Complemental strand, 17129903 - 17129837
Alignment:
| Q |
364 |
aagcaactttcatccctctcaatttgttctttacatgattccaatgtaaagagaaacaaatttattt |
430 |
Q |
| |
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|||||||||| ||| || |||||||||||||||||| | ||| ||||||| | |||||||||||||| |
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| T |
17129903 |
aagcaacttttatcactttcaatttgttctttacataactcctatgtaaaaacaaacaaatttattt |
17129837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
706 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
753 |
Q |
| |
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||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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