View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_41 (Length: 415)
Name: NF18068_low_41
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 30352078 - 30351753
Alignment:
| Q |
21 |
ctccccactattattggggatatcaagttgagataatttgtgttctactaatcaaattatttataattcatattttgaaactgttgtaactaacaaattt |
120 |
Q |
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| T |
30352078 |
ctccccactattattggggacatcaaattgagataatttgtgttctactaatcaaatcatttataattcatattttgaaactgttgtaactaacaaattt |
30351979 |
T |
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| Q |
121 |
ttaatttatcaaagtttttgagtattaacattgtgattttgggtatattaaatgtcatattctttaccgtcgttaatttttt-aatnnnnnnntagtcct |
219 |
Q |
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| T |
30351978 |
ttaatttatcaaagtttttgagtattaacattgtgattttgggtatattaaatgtcatattctttactgtcgttaatttttttaataaaaaaatagtcca |
30351879 |
T |
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| Q |
220 |
agtttacccgttcccgttaccagtttaactaattaagtatagttatcataaattatattttgaggt---ttagggtgtcgcattcgtaattaataataat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30351878 |
agtttacccgttcccgttaccagtttaactaattaagtatagttatcataaattatattttgaggtttattagggtgtcgcattcgtaattaataataat |
30351779 |
T |
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| Q |
317 |
atcttttcactttcatttttttcttt |
342 |
Q |
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||||||||| |||||||||||||||| |
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| T |
30351778 |
atcttttcattttcatttttttcttt |
30351753 |
T |
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