View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_50 (Length: 398)
Name: NF18068_low_50
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 241 - 392
Target Start/End: Complemental strand, 26619202 - 26619051
Alignment:
| Q |
241 |
gttcctcccaaacgataaactctatcaatataataaattaataatgcaactacatcgtactatcaaaaaatatactgctacaaatcactcttacccagcg |
340 |
Q |
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| T |
26619202 |
gttcctcccaaacgataaactctatcaatataataaattaataatgcaactacatcgtactattaaaaaatatactactacaaatcactcttacccagcc |
26619103 |
T |
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| Q |
341 |
acaaatttttgcagctcaagactagtaaattttattttattattttcttgga |
392 |
Q |
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| T |
26619102 |
acaaatttttgcagctcaagactagtaaattttattttaatatttttttgga |
26619051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 26620122 - 26620011
Alignment:
| Q |
15 |
aattaatacaactttttattacttctatttttgtgttgattattggattttcactttaataaccaacattctaaggaattttaaatataannnnnnnata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26620122 |
aattaatacaactttttattacttctatttttgtgttgattattggattttcactttaataaccaacattctaaggaattttaaatataatttttttata |
26620023 |
T |
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| Q |
115 |
caggctactcat |
126 |
Q |
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|||||||||||| |
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| T |
26620022 |
caggctactcat |
26620011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 26619310 - 26619240
Alignment:
| Q |
136 |
aaaatcgattattctattgaaacctttaaaaatcaatttttaatctcgtgtttatacttcccaaacctcga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26619310 |
aaaatcgattattctattgaaacctttaaaaatcaatttttaatctcgtgtttatacttcccaaacctcga |
26619240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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