View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_53 (Length: 376)
Name: NF18068_low_53
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 229689 - 229345
Alignment:
| Q |
14 |
agactctagaagtaagagagttgtgaatgttagggcgaatatgaaacacctcacaaagggggaggcccacaccaactattagtccagaacttgatatttt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
229689 |
agactctagaagtaagagagttgtgaatgttagggcgaatatgaaacacctcacaaagggggaggcccacaccaactatcagtccagaacttgatatttt |
229590 |
T |
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| Q |
114 |
ccccatttcctaacaaacatgtggaattctcatgaaatgtggtatattcacttttgacattgctccaaattgaggaagaaacatgatgaacaatatgtct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229589 |
ccccatttcctaacaaacatgtggaattctcatgaaatgtggtatattcacttttgacattgctccaaattgaggaagaaacatgatgaacaatatgtct |
229490 |
T |
|
| Q |
214 |
cctatatctgagaactctattttttaggatgactgcccatatttcatcagaattaagcaaattccaacaaagcttgaggtttgaggcttcattaattttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229489 |
cctatatctgagaactctattttttaggatgactgcccacatttcatcagaattaagcaaattccaacaaagcttgaggtttgaggcttcattaattttg |
229390 |
T |
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| Q |
314 |
attaaagatttcagacctaagcctccttcatcaaatggtctataa |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229389 |
attaaagatttcagacctaagcctccttcatcaaatggtctataa |
229345 |
T |
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