View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_57 (Length: 363)
Name: NF18068_low_57
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 837391 - 837670
Alignment:
| Q |
14 |
caaaggaataaaaagtacaatttctctaggagataacatcattgttatgtacctcatgaatcatgatcttggacttcaacttgaacttgaaagaaatcac |
113 |
Q |
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| T |
837391 |
caaaggaataaaaagtacaatttctctaggagataacatcattgttat-------------catgatcttggacttcaacttgaacttgaaagaaatcac |
837477 |
T |
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| Q |
114 |
nnnnnnnnnnnnnnnnnnnctttgactcatgtttcggttttatgtacttcaaattgtatgcaaccaagaaagagatatacaacttgacctcaacttgaa- |
212 |
Q |
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| T |
837478 |
ttttgattttttgttttttctttgactcatgttttggttttatgtacttcaaattgtatgcaaccaagaaagagatatacaacttgacctcaacttgaat |
837577 |
T |
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| Q |
213 |
---------actaaaatgcatacatttaggctagttttggggactagatccaaagtacacttagtcaatagtcaatatctgagtcaactagct |
296 |
Q |
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| T |
837578 |
tgataggaaactaaaatgcatacatttaggctagttttggggactagatccaaagtacacttagtcaatagtcaacatctgagtcaactagct |
837670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 280
Target Start/End: Original strand, 819357 - 819512
Alignment:
| Q |
133 |
ctttgactcatgtttcggttttatgtacttcaaattgtatgcaaccaagaaagagatatacaacttgacctcaacttgaa----------actaaaatgc |
222 |
Q |
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| T |
819357 |
ctttgactcatattttggttttatgtatttcaact-gtatgcaatcaacaaagagataaacaacttgacctcaacttgaattgataggaaattgaaatgt |
819455 |
T |
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| Q |
223 |
atacatttaggctagttttggggactagatccaaagtacacttagtcaatagtcaata |
280 |
Q |
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| T |
819456 |
atacatttaggctagttttggggactagatccatagtacacttagtc-atagtcaata |
819512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 819258 - 819305
Alignment:
| Q |
14 |
caaaggaataaaaagtacaatttctctaggagataacatcattgttat |
61 |
Q |
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| T |
819258 |
caaaggaataaaaagtacaatttctctaggagataacatcattgttat |
819305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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