View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_59 (Length: 358)
Name: NF18068_low_59
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 38075908 - 38076209
Alignment:
| Q |
19 |
acatgtcgaagttttcactttggccataaaaagtggatatggtaaatgtaggatgaccctacttcaactttgtttgtgttaagtttaaatttagatgcag |
118 |
Q |
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| T |
38075908 |
acatgtcgaagttttcactttggccataaaaagtggatatggtaaatgtaggatgaccctacttcaactttgtttgtgttaaatttaaatttagatgcag |
38076007 |
T |
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| Q |
119 |
tcatgaatccctcnnnnnnnn-tgcagtcatgagtatatctctgctaagtggctacaataattgtcatagtgaaagtttactttcttttatctctcttgt |
217 |
Q |
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| T |
38076008 |
tcatgaatccctcaaaaaaaaatgcagtcatgagtatatctctgctaagtggctacaataattgtcatagtgaaagtttactttcttttatctctcttgt |
38076107 |
T |
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| Q |
218 |
ccccatttttctttttagttattagataaacttcaagtacttcaataaagaaaaagaaattggcctaacatatgcatgttagatctacaagtgatgataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38076108 |
ccccatttttctttttagttattagataaacttcaagtacttcaataaagaaaaagaaattggcctaacatatgcatgttagatctacaagtgatgataa |
38076207 |
T |
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| Q |
318 |
aa |
319 |
Q |
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|| |
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| T |
38076208 |
aa |
38076209 |
T |
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