View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_low_6 (Length: 844)
Name: NF18068_low_6
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 788; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 31 - 830
Target Start/End: Original strand, 7098679 - 7099478
Alignment:
| Q |
31 |
agatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098679 |
agatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaa |
7098778 |
T |
|
| Q |
131 |
agcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098779 |
agcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgac |
7098878 |
T |
|
| Q |
231 |
aggtgtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098879 |
aggtgtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgt |
7098978 |
T |
|
| Q |
331 |
aagcctttgatctccagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttctta |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098979 |
aagcctttgatctccagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttctta |
7099078 |
T |
|
| Q |
431 |
agcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctgg |
530 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7099079 |
agcaagataattttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctgg |
7099178 |
T |
|
| Q |
531 |
aagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttagggaagggttttatgccaaaattgtgaagc |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7099179 |
aagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttagggaagggttttatgccaaaattgtgaagc |
7099278 |
T |
|
| Q |
631 |
tctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagtgtgctttattggtatgaaacttccaa |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7099279 |
tctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagtgtgctttattggtatgaaacttccaa |
7099378 |
T |
|
| Q |
731 |
agcgaaatcgaaaataatatgggttatacaatgttcgcaatgattctgcatttgtgaaggaatcctcttcccataatatcggacgcggatagttgaaact |
830 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7099379 |
agcgaaatcgaaaataatctgggttatacaatgttcgcaatgattctgcatttgtgaaggaatcctcttccaataatatcggacgcggatagttgaaact |
7099478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 35 - 723
Target Start/End: Complemental strand, 7582563 - 7581875
Alignment:
| Q |
35 |
atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7582563 |
atggtagtttaccaagtgatgaaaaccgttcacagtgcatgcaacccttaatttcaagagtaactaaattaccaagagttctgatccaacttgggaagca |
7582464 |
T |
|
| Q |
135 |
taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggt |
234 |
Q |
| |
|
||| |||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||| || ||||| |||| | |
|
|
| T |
7582463 |
taaacctttgtaaaaatctattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatagtggtcttaacagat |
7582364 |
T |
|
| Q |
235 |
gtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagc |
334 |
Q |
| |
|
| |||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
7582363 |
gaatcattgtgcaaccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatttggtaagc |
7582264 |
T |
|
| Q |
335 |
ctttgatctccagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagca |
434 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
7582263 |
ctctgatctccagctttcctcctaagtttagatcacgtaactccgctaagctatgtcctttctcggaatttacaatataaacacttaatgttcttaagca |
7582164 |
T |
|
| Q |
435 |
agataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaaga |
534 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7582163 |
agataattttccaacatgacgaaacatgcgagacaacaaatgacaatcttcaatgactaaatgtctaagattttgtaagcaagacaagtgttccggaaga |
7582064 |
T |
|
| Q |
535 |
caactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttagggaagggttttatgccaaaattgtgaagctcta |
634 |
Q |
| |
|
|||||||| |||| ||| || ||| |||||||||| ||| |||||||| |||||| ||||| ||||||| || |||| |||||||||||||||||| |
|
|
| T |
7582063 |
caactcaggttggaaaaatctttcaatttcaagattttcaacttttgtaagctataaattgagtcggggaaggtttctatgtcaaaattgtgaagctcta |
7581964 |
T |
|
| Q |
635 |
aatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagtgtgctttattggtatgaaa |
723 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||| || || |||||| |||| |||||| ||||| |||| ||||| ||||| |||| |
|
|
| T |
7581963 |
aatacctcaaatgaattaaactaccaagtaatgataactctaaagtgcttgttttcaaaacgcgaagggtgtactttactggtaagaaa |
7581875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 35 - 717
Target Start/End: Original strand, 13615872 - 13616549
Alignment:
| Q |
35 |
atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
13615872 |
atggtagtttaccaagtgatgaaaaccgttctcaatgcacgcaatccttaactttaagagtaactaaattactatgagttctgatccaacttgagaagca |
13615971 |
T |
|
| Q |
135 |
taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggt |
234 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||| |||| ||| |||||||||| | |
|
|
| T |
13615972 |
taatcctttgtaagaatatattttcaagctcttgagatttgga-gaggt-gaagcacttcaagtacttgatcatcactaataataggggtcttgacagat |
13616069 |
T |
|
| Q |
235 |
gtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagc |
334 |
Q |
| |
|
| ||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | ||||||||||| |
|
|
| T |
13616070 |
gaatctttgtgctgccatgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaagc |
13616169 |
T |
|
| Q |
335 |
ctttgatctccagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagca |
434 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||| |||| | |||||||||||| ||| ||| ||||||| ||| |
|
|
| T |
13616170 |
ctttgatctccagctttcctcctaagtctagatcatgtaactttgctaagttatctcct------agattaacaatatagacagttattgttcttaggca |
13616263 |
T |
|
| Q |
435 |
agataagtttccaatgtgaggaaacatgcgagacaatgaattacaa---ccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctgga |
531 |
Q |
| |
|
| |||| ||||||||||||||| | || ||||||| |||| |||| |||||||| | ||| |||||||| |||||||||||||||| ||| ||| |
|
|
| T |
13616264 |
atataattttccaatgtgaggacccttgtgagacaacgaataacaatttaattcaatgacttaatatctaagatgttgtaagcaagacaagcgtttcgga |
13616363 |
T |
|
| Q |
532 |
agacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttagggaagggttttatgccaaaattgtgaagct |
631 |
Q |
| |
|
|| |||||||| ||| ||||||| ||||||||||||||||| | |||||| | |||||| ||||| |||||||| |||||| ||||| ||||||||| |
|
|
| T |
13616364 |
aggaaactcagtctgggaaaggctttcaacttcaagatttccattttttgtatgctataaattgagtcagggaaggtttttatctcaaaactgtgaagct |
13616463 |
T |
|
| Q |
632 |
ctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagtgtgctttattggt |
717 |
Q |
| |
|
| |||||| ||| ||||||| || |||||||||||| || || | ||||| | ||| |||| | |||| ||||||||| ||||| |
|
|
| T |
13616464 |
ccaaatacatcaaatgaatttaaccaccgagtaatgataactctatagtgttttttcttaaaaactgaagggtgtgctttcttggt |
13616549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 253 - 542
Target Start/End: Complemental strand, 20297217 - 20296928
Alignment:
| Q |
253 |
gacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagctttc |
352 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |||||||||||| ||| |||| |
|
|
| T |
20297217 |
gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc |
20297118 |
T |
|
| Q |
353 |
ctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaatgtg |
452 |
Q |
| |
|
| || | ||||||||||||||||||| ||||||| ||||||| ||| ||||||| || |||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
20297117 |
caccaagttttagatcacgtaactctgtcaagctattccctttctttaaactaacaatgtacacacttaatgttcttagacaagataattttccaatgct |
20297018 |
T |
|
| Q |
453 |
aggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcag |
542 |
Q |
| |
|
||||||||| |||||||| || |||| ||||||||| || ||||||||||||||||| ||| | |||||||| |||||||||||||| |
|
|
| T |
20297017 |
aggaaacattcgagacaaagaccaacaatcttcaatgactatatgtctaagattttgtaggcaggccaagtgtttcggaagacaactcag |
20296928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 248 - 537
Target Start/End: Original strand, 52351438 - 52351727
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
347 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| |||||||| ||| | | |||||||| || | |||||||| || ||||| || ||| |
|
|
| T |
52351438 |
tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag |
52351537 |
T |
|
| Q |
348 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
447 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| | || || | | | | || || || ||||||| ||||||| | ||||||| ||||| |
|
|
| T |
52351538 |
ttttccttctagctttagatcacgtaactctgccaagttgtgccccgtttttgatctgactatgtatacacttactgttcttagggaagataatcttcca |
52351637 |
T |
|
| Q |
448 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaa |
537 |
Q |
| |
|
|||| ||| ||||| | |||||||||| |||| |||||||||| | |||||| |||| || ||||||| ||| ||||||| |||||| |
|
|
| T |
52351638 |
atgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagcaattcaaacgttctggtagacaa |
52351727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 20297383 - 20297268
Alignment:
| Q |
87 |
ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga |
186 |
Q |
| |
|
||||| || |||||||||||||||| | | ||||||||||| || || ||||| | || ||| ||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
20297383 |
ttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttga |
20297284 |
T |
|
| Q |
187 |
agcacttcaattactt |
202 |
Q |
| |
|
|||||||| | ||||| |
|
|
| T |
20297283 |
agcacttcgagtactt |
20297268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 28)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 386 - 830
Target Start/End: Original strand, 17982513 - 17982964
Alignment:
| Q |
386 |
tatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttc |
485 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| | | ||||||| ||||| ||||||||||||||||||||| ||||||| |||| ||||| ||| |
|
|
| T |
17982513 |
tatgtcctttctctggattaacaatatagacacttaatgattttaagcatgataattttccaatgtgaggaaacatgtgagacaacgaataacaacgttc |
17982612 |
T |
|
| Q |
486 |
aatgattaaatgtctaagattttgtaagc-aagacaagtgttctggaagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaa |
584 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||| ||| || ||||||||||||||| || | | ||| ||||||||||||||| ||||||| |
|
|
| T |
17982613 |
aatgactaaatgtctaagattttgtaaacaaagacagacgtttcggcagacaactcagtttgtaaacagatttcaatttcaagatttccaatttttgtaa |
17982712 |
T |
|
| Q |
585 |
gttataaactgagttagggaagggttttatgccaaaattgtgaagctctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtct |
684 |
Q |
| |
|
| |||||| ||||| ||||| |||||| ||||| |||||||||| |||||||||| |||||||| |||| |||||||||| || || ||||| | | |
|
|
| T |
17982713 |
gctataaattgagtcggggaatatttttatctcaaaactgtgaagctccaaatacctcaaatgaattaaactaacgagtaatgataactctaaagtcttt |
17982812 |
T |
|
| Q |
685 |
gttcgcaaaacccgaagagtgtgctttattggtatgaaacttccaaagcgaaatcgaaaataat-----atgggtt-atacaatgttcgcaatgattctg |
778 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| || |||| |||||| ||| |||||| | | | ||| ||| ||||||||||| ||||||| |
|
|
| T |
17982813 |
gttcttaaaacccgaagagtttgctttattggtaagacactttcaaagcttaattgaaaatcttctctaaagtgttgataaaatgttcgcaacgattctg |
17982912 |
T |
|
| Q |
779 |
catttgtgaaggaatcctcttcccataatatcggacgcggatagttgaaact |
830 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||| | ||| ||||||||| |
|
|
| T |
17982913 |
gttttttgaaggaatcctcttctaataataccggacacagatggttgaaact |
17982964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 35 - 364
Target Start/End: Original strand, 17982186 - 17982514
Alignment:
| Q |
35 |
atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
17982186 |
atggtagtttaccaagtgatgaaaaccgttcacaaagcatgcaatccttaacaataagagtaagtaaattgctaagagttctgatccaacttgggaagca |
17982285 |
T |
|
| Q |
135 |
taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggt |
234 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||| |||||| | ||||||||||||||||||| ||| |||||||||| |||| ||| |||||||||| | |
|
|
| T |
17982286 |
taatccttggtaataatatattttcaagcccttaagatttctgtgaggttgaagcacttcaaatacacgatcatcactaataataggggtcttgacagat |
17982385 |
T |
|
| Q |
235 |
gtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagc |
334 |
Q |
| |
|
| | | | |||||||| ||||||||||| ||||||||||||||| || ||||| ||||||| | ||||||||||||||| ||||||||| || |
|
|
| T |
17982386 |
gaaccttggtgccgccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgt-agg |
17982484 |
T |
|
| Q |
335 |
ctttgatctccagctttcctcctaaattta |
364 |
Q |
| |
|
|| |||| ||||| ||||||||||| |||| |
|
|
| T |
17982485 |
ctctgatttccagttttcctcctaagttta |
17982514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 249 - 545
Target Start/End: Original strand, 30749116 - 30749412
Alignment:
| Q |
249 |
ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagc |
348 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||| || ||| ||||||||||||||| |||||||| | ||| |||||||| ||| |
|
|
| T |
30749116 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt |
30749215 |
T |
|
| Q |
349 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
448 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
30749216 |
tttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttccaa |
30749315 |
T |
|
| Q |
449 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
||| |||||||||| ||||||| || ||||| | ||||||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
30749316 |
tgttaggaaacatgagagacaaagatttacatctgtcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagttt |
30749412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 248 - 545
Target Start/End: Complemental strand, 30243003 - 30242706
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
347 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| || ||| ||||||||||||||| |||||||| | |||| || ||| ||| |
|
|
| T |
30243003 |
tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag |
30242904 |
T |
|
| Q |
348 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
447 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| |||||||||| |||||||| ||||||| |||| ||| |||||| |
|
|
| T |
30242903 |
ttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatatacacacttaatgttcttagacaagttaattttcca |
30242804 |
T |
|
| Q |
448 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
|||| |||||||||| ||||||| || ||| ||| ||||| || ||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
30242803 |
atgttaggaaacatgagagacaaagaccgacattctttaatgactatatgtctaagattttgtaagcaagccaagtgttttgggagacaactcagttt |
30242706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 247 - 545
Target Start/End: Original strand, 30059840 - 30060138
Alignment:
| Q |
247 |
ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctcca |
346 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| ||||| || ||| ||||||| |||| || |||||||| | ||| |||| ||| | || |
|
|
| T |
30059840 |
ttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatccttggatatgca |
30059939 |
T |
|
| Q |
347 |
gctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcc |
446 |
Q |
| |
|
| ||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||| ||| ||||| |
|
|
| T |
30059940 |
gttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttcc |
30060039 |
T |
|
| Q |
447 |
aatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
||||| |||||||||| ||||||| || ||| ||||||||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
30060040 |
aatgttaggaaacatgagagacaaagaccgacatacttcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagttt |
30060138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 248 - 545
Target Start/End: Complemental strand, 30339156 - 30338859
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
347 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||| ||||| || ||| |||||||||||| || |||||||| | ||| |||| ||| | ||| |
|
|
| T |
30339156 |
tccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag |
30339057 |
T |
|
| Q |
348 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
447 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||||||| |||||| |
|
|
| T |
30339056 |
ttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagataattttcca |
30338957 |
T |
|
| Q |
448 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
|||| ||||||||| ||||||| || ||| ||||||||| || ||| ||||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
30338956 |
atgttaggaaacattagagacaaagaccgacattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttggaagacaactcagttt |
30338859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 248 - 544
Target Start/End: Original strand, 30435294 - 30435590
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
347 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| | ||||| || ||| |||||||||||||||||||||||| | ||| |||||||| ||| |
|
|
| T |
30435294 |
tccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgatactcag |
30435393 |
T |
|
| Q |
348 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
447 |
Q |
| |
|
||||| || | ||||||||| ||||||||| ||||||| ||||||||| ||| ||||||| || |||||||| ||||||| |||| ||| |||||| |
|
|
| T |
30435394 |
ttttccaccgaggtttagatcatgtaactctgtcaagctatttcctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttcca |
30435493 |
T |
|
| Q |
448 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtt |
544 |
Q |
| |
|
|||| |||||||| ||| | || || ||| |||||||||| || |||||||||||||||||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
30435494 |
atgttgggaaacattcgaaataaagatccacatccttcaatgactatatgtctaagattttgtaagcaaaccaagcgttttgggagacaactcagtt |
30435590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 248 - 542
Target Start/End: Original strand, 30482876 - 30483170
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
347 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| || ||| |||||||||||| || |||||||| | ||| |||| ||| | ||| |
|
|
| T |
30482876 |
tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag |
30482975 |
T |
|
| Q |
348 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
447 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| | | ||||||| || |||||||| ||||||| |||| ||| |||||| |
|
|
| T |
30482976 |
ttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctacactaacaatgtacacacttaatgttcttagacaagttaattttcca |
30483075 |
T |
|
| Q |
448 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcag |
542 |
Q |
| |
|
|||| ||||||||| ||||||| || ||| ||||||||| || ||| ||||||||||||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
30483076 |
atgttaggaaacatttgagacaaagaccgacattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttgggagacaactcag |
30483170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 247 - 545
Target Start/End: Complemental strand, 30714054 - 30713756
Alignment:
| Q |
247 |
ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctcca |
346 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| ||||| || ||| ||||||| ||||||| |||||||| | ||| |||||||| || |
|
|
| T |
30714054 |
ttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactca |
30713955 |
T |
|
| Q |
347 |
gctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcc |
446 |
Q |
| |
|
| ||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||| ||| ||||| |
|
|
| T |
30713954 |
gttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttcc |
30713855 |
T |
|
| Q |
447 |
aatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
||||| ||||||||| |||||||| || ||| ||||||||| || |||||||||||||||||| |||| |||| ||| ||||| ||||| ||||| |
|
|
| T |
30713854 |
aatgttaggaaacattcgagacaaagatcgacattcttcaatgactatatgtctaagattttgtaaacaagccaagcgtttcggaaggcaactaagttt |
30713756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 249 - 533
Target Start/End: Complemental strand, 30677798 - 30677514
Alignment:
| Q |
249 |
ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagc |
348 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| || || || ||| |||||||||||||||| ||||||| | ||| |||||||| ||| |
|
|
| T |
30677798 |
ccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttgatactcagt |
30677699 |
T |
|
| Q |
349 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
448 |
Q |
| |
|
||||| | | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| |||||||| |||| ||| |||| || |
|
|
| T |
30677698 |
tttccactgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttctaa |
30677599 |
T |
|
| Q |
449 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaag |
533 |
Q |
| |
|
||| ||||||||| |||||||| || | |||| |||||||| || |||||||||||||||||| |||| |||| ||| |||||| |
|
|
| T |
30677598 |
tgttaggaaacatacgagacaaagattcacaatattcaatgactatatgtctaagattttgtaaacaagccaagcgttttggaag |
30677514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 249 - 544
Target Start/End: Original strand, 29852784 - 29853079
Alignment:
| Q |
249 |
ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagc |
348 |
Q |
| |
|
||||||||| |||||||||| | |||| |||||||||| ||||| || ||| ||||||||||||||| || |||| || |||||||||||| |||| |
|
|
| T |
29852784 |
ccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgatactcagc |
29852883 |
T |
|
| Q |
349 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
448 |
Q |
| |
|
||||| || | |||||||||| |||||||| ||||||| |||||||| ||| ||||||| || | ||||| ||||||| |||||||| || |||| |
|
|
| T |
29852884 |
tttccaccaaggtttagatcacataactctgtcaagctattccctttctctaaactaacaatgtacatgcttaatgttcttagacaagataatttgccaa |
29852983 |
T |
|
| Q |
449 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtt |
544 |
Q |
| |
|
||| |||||||||| ||||||| || ||| |||| ||||| || ||||||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
29852984 |
tgttaggaaacatgagagacaaagatcgacatcctttaatgactatatgtctaagattttgtaagcaagccaagtgtttcgggagacaactcagtt |
29853079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 248 - 522
Target Start/End: Original strand, 29871658 - 29871932
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag |
347 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| ||||| || ||| ||||||||||||||| |||||||| | ||| |||| ||| ||| |
|
|
| T |
29871658 |
tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag |
29871757 |
T |
|
| Q |
348 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
447 |
Q |
| |
|
||||| || | ||||||||||||||||||| || |||| |||||||| ||| ||||||| || |||||||| |||||||| |||| ||| |||||| |
|
|
| T |
29871758 |
ttttccaccgagttttagatcacgtaactctgtcaaactattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttcca |
29871857 |
T |
|
| Q |
448 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaag |
522 |
Q |
| |
|
|||| ||||||||| | |||||| || ||| ||||||||| || |||||||||||||||||| |||| |||| |
|
|
| T |
29871858 |
atgttaggaaacatactagacaaagatcgacattcttcaatgactatatgtctaagattttgtaaacaagccaag |
29871932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 249 - 544
Target Start/End: Original strand, 30399550 - 30399845
Alignment:
| Q |
249 |
ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagc |
348 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| || ||| ||||| ||||||||| |||| || || |||||||| ||| ||| |
|
|
| T |
30399550 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt |
30399649 |
T |
|
| Q |
349 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
448 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||| ||| | || ||| ||||||| |
|
|
| T |
30399650 |
tttccaccgaggtttagatcacgtaactctgacaagctattccctttctctaaactaacaatgtacacacttaatgtttttagactagttaattttccaa |
30399749 |
T |
|
| Q |
449 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtt |
544 |
Q |
| |
|
||| ||||||||| |||||||| || ||||| |||||| | || ||||||||||||||||||| ||| |||| ||| ||| |||||| |||||| |
|
|
| T |
30399750 |
tgttaggaaacattcgagacaaagatatacaatattcaataactatatgtctaagattttgtaagaaagccaagcgttttgggagacaaatcagtt |
30399845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 259 - 522
Target Start/End: Original strand, 30206008 - 30206271
Alignment:
| Q |
259 |
cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagctttcctccta |
358 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||| | ||| |||||||| || |||||||| | |
|
|
| T |
30206008 |
cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatacttagttttcctccca |
30206107 |
T |
|
| Q |
359 |
aatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaa |
458 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| || | ||| |||||||||| ||||| |
|
|
| T |
30206108 |
ggtttagatcgtgtaactctgccaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaggttaattttccaatgtatggaaa |
30206207 |
T |
|
| Q |
459 |
catgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaag |
522 |
Q |
| |
|
|||| || ||||||||| ||| ||| ||||| | |||||| ||||| ||||| |||| |||| |
|
|
| T |
30206208 |
catgtgaaacaatgaatggcaatctttaatgacaagatgtctgagattctgtaaacaagccaag |
30206271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 247 - 341
Target Start/End: Complemental strand, 17418789 - 17418695
Alignment:
| Q |
247 |
ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgat |
341 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||| || || || ||||||| ||||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
17418789 |
ttccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgat |
17418695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 30399383 - 30399504
Alignment:
| Q |
82 |
ccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgag |
181 |
Q |
| |
|
|||| |||||||| |||||||||||||||| | | ||||||||||| || ||||||| | || ||| ||||||||||| ||||||||||| |||| |
|
|
| T |
30399383 |
ccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgag |
30399482 |
T |
|
| Q |
182 |
gttgaagcacttcaattacttg |
203 |
Q |
| |
|
||||||||||||| | |||||| |
|
|
| T |
30399483 |
gttgaagcacttcgagtacttg |
30399504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 30243152 - 30243027
Alignment:
| Q |
87 |
ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga |
186 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||||||||| ||| ||||||| | || || ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
30243152 |
ttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtgaggttga |
30243053 |
T |
|
| Q |
187 |
agcacttcaattacttgatcatcact |
212 |
Q |
| |
|
|||||||||| |||||| ||| |||| |
|
|
| T |
30243052 |
agcacttcaagtacttgctcagcact |
30243027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 30748966 - 30749091
Alignment:
| Q |
87 |
ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga |
186 |
Q |
| |
|
|||||||| || ||||||||||||| | | ||||||||||| || ||||||||| || ||| |||| |||||| |||||||||| ||||||||| |
|
|
| T |
30748966 |
ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga |
30749065 |
T |
|
| Q |
187 |
agcacttcaattacttgatcatcact |
212 |
Q |
| |
|
|||||||||| |||||| ||| |||| |
|
|
| T |
30749066 |
agcacttcaagtacttgctcagcact |
30749091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 545
Target Start/End: Original strand, 30475010 - 30475150
Alignment:
| Q |
405 |
aacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaaga |
504 |
Q |
| |
|
|||||| || |||||||| ||||||| | || | || |||||||| | |||||||| | |||||||||||||||| ||||||||| | ||| || ||| |
|
|
| T |
30475010 |
aacaatgtatacacttaatgttcttaggaaatacaattttccaatataaggaaacacacaagacaatgaattacaatcttcaatgacaagatgcctgaga |
30475109 |
T |
|
| Q |
505 |
ttttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
|| ||||| |||| |||||||| ||| ||| || ||||||| |
|
|
| T |
30475110 |
ttctgtaaacaagtcaagtgttttggtagaaaagtcagttt |
30475150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 30474853 - 30474932
Alignment:
| Q |
248 |
tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattt |
327 |
Q |
| |
|
||||||||||| ||||||| | |||||| ||||||||||| |||||||| | | ||||||| |||| |||||||||||| |
|
|
| T |
30474853 |
tccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacattt |
30474932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 30522348 - 30522302
Alignment:
| Q |
150 |
atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa |
196 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
30522348 |
atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa |
30522302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 30562688 - 30562642
Alignment:
| Q |
150 |
atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa |
196 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
30562688 |
atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa |
30562642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 30714212 - 30714074
Alignment:
| Q |
89 |
caagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaag |
188 |
Q |
| |
|
|||||| |||||||||||||||| | | ||||||||||| || ||||||||| || ||| |||| |||||| |||||||||| ||||||||||| |
|
|
| T |
30714212 |
caagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaag |
30714113 |
T |
|
| Q |
189 |
cacttcaattacttgatcatcactgataacaggagtctt |
227 |
Q |
| |
|
| |||| | |||||| ||| |||| | |||||| ||||| |
|
|
| T |
30714112 |
ctcttcgagtacttgctcagcactaacaacaggggtctt |
30714074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 17418941 - 17418824
Alignment:
| Q |
95 |
taactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttc |
194 |
Q |
| |
|
||||||||||||||||| | || ||||||||||| || ||| ||| | || || ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
17418941 |
taactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttc |
17418842 |
T |
|
| Q |
195 |
aattacttgatcatcact |
212 |
Q |
| |
|
|| || ||| ||| |||| |
|
|
| T |
17418841 |
aagtagttgctcagcact |
17418824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 538
Target Start/End: Complemental strand, 30522084 - 30521963
Alignment:
| Q |
417 |
acttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaa |
516 |
Q |
| |
|
|||||| ||||||| | ||||||| || ||||||| ||| |||| || ||||||| || |||| |||||| | | |||||| ||||||||||||||| |
|
|
| T |
30522084 |
acttaatgttcttagggaagataatttaccaatgttagggaacacacgggacaatgcatcacaattttcaataacaagatgtctgagattttgtaagcaa |
30521985 |
T |
|
| Q |
517 |
gacaagtgttctggaagacaac |
538 |
Q |
| |
|
| ||||||||| || ||||||| |
|
|
| T |
30521984 |
gtcaagtgttccggtagacaac |
30521963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 538
Target Start/End: Complemental strand, 30562424 - 30562303
Alignment:
| Q |
417 |
acttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaa |
516 |
Q |
| |
|
|||||| ||||||| | ||||||| || ||||||| ||| |||| || ||||||| || |||| |||||| | | |||||| ||||||||||||||| |
|
|
| T |
30562424 |
acttaatgttcttagggaagataatttaccaatgttagggaacacacgggacaatgcatcacaattttcaataacaagatgtctgagattttgtaagcaa |
30562325 |
T |
|
| Q |
517 |
gacaagtgttctggaagacaac |
538 |
Q |
| |
|
| ||||||||| || ||||||| |
|
|
| T |
30562324 |
gtcaagtgttccggtagacaac |
30562303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 30474760 - 30474811
Alignment:
| Q |
152 |
gtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttg |
203 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
30474760 |
gtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttg |
30474811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 30677948 - 30677823
Alignment:
| Q |
87 |
ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga |
186 |
Q |
| |
|
|||||||| || ||||||||||||| | | ||||||||||| || |||||| || || ||| |||| |||||| |||||||||| ||||||| | |
|
|
| T |
30677948 |
ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggttta |
30677849 |
T |
|
| Q |
187 |
agcacttcaattacttgatcatcact |
212 |
Q |
| |
|
|||||||||| |||||| ||| |||| |
|
|
| T |
30677848 |
agcacttcaagtacttgctcagcact |
30677823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 249 - 542
Target Start/End: Original strand, 26706817 - 26707110
Alignment:
| Q |
249 |
ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagc |
348 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||||| ||||||||||||| ||||||||||||||| ||||||| || |||||||| ||| ||| |
|
|
| T |
26706817 |
ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt |
26706916 |
T |
|
| Q |
349 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
448 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| || ||||| ||||||| |
|
|
| T |
26706917 |
tttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaggataattttccaa |
26707016 |
T |
|
| Q |
449 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcag |
542 |
Q |
| |
|
|| ||||||||| |||||||| || ||| |||||||||| || |||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
26707017 |
tgctaggaaacattcgagacaaagatccacatccttcaatgactatatgtctaagattttgtaaacaagtcaagtgtttaggaagacaactcag |
26707110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 26706650 - 26706761
Alignment:
| Q |
82 |
ccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgag |
181 |
Q |
| |
|
|||| |||||||| |||||||||||||||| | || | ||||||||| || ||||||| | ||| | | ||||| ||||| ||||||||||| |||| |
|
|
| T |
26706650 |
ccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgag |
26706749 |
T |
|
| Q |
182 |
gttgaagcactt |
193 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26706750 |
gttgaagcactt |
26706761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 25294271 - 25294203
Alignment:
| Q |
477 |
acaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
545 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
25294271 |
acaacattgaatgattagatgtctaagattttgtaagcaagccaaatgttttggaagaccactcagttt |
25294203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University