View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_65 (Length: 346)
Name: NF18068_low_65
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 34924803 - 34925119
Alignment:
| Q |
15 |
cacagagcttccatgtatgagttt-agacgccctttgcatgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatagacgg |
113 |
Q |
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| T |
34924803 |
cacaaagcttccatgtatgagttttagacgccctttgcatgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatagacgg |
34924902 |
T |
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| Q |
114 |
tacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaacccttgc |
213 |
Q |
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| T |
34924903 |
tacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaacccttgc |
34925002 |
T |
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| Q |
214 |
tagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgat |
313 |
Q |
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| T |
34925003 |
tagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgat |
34925102 |
T |
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| Q |
314 |
taaaaatcagaagttta |
330 |
Q |
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| T |
34925103 |
tcaaaaccagaagttta |
34925119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 34929171 - 34929479
Alignment:
| Q |
15 |
cacagagcttccatgtatgagtttagacgccctttgcatgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatagacggt |
114 |
Q |
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| T |
34929171 |
cacaaagcttccatatatgagtttagacccccttcccatgcaagtcgattaacacatttccaataattttccattacatccaagtgttacaatagacggt |
34929270 |
T |
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| Q |
115 |
acatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaacccttgct |
214 |
Q |
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| T |
34929271 |
acatgggggagggacttactagagtagatccctcaccttagaagccagctaacaattcatctataaattgtggtcaagataataatccagaacccttgca |
34929370 |
T |
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| Q |
215 |
agaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgatt |
314 |
Q |
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||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |
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| T |
34929371 |
agatgtgattagaatactgatagaatcaggcatcgaacagaaacaaacagattgcacaatacgaatactt--ttgatgacaataattctggagaataatt |
34929468 |
T |
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| Q |
315 |
aaaaatcagaa |
325 |
Q |
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|||| ||||| |
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| T |
34929469 |
caaaaccagaa |
34929479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 34934941 - 34935019
Alignment:
| Q |
247 |
ccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaa |
325 |
Q |
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| T |
34934941 |
ccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggataataattcaaaaccagaa |
34935019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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