View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_7 (Length: 825)
Name: NF18068_low_7
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 10 - 536
Target Start/End: Complemental strand, 16908738 - 16908211
Alignment:
| Q |
10 |
agaagcaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacacta |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16908738 |
agaaacaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacacta |
16908639 |
T |
|
| Q |
110 |
ttatggaaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattgg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16908638 |
ttatggaaagtgtaaatgcaggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattgg |
16908539 |
T |
|
| Q |
210 |
tgtggcagttggtgcaaaagaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatataggaaaggcaataggtttattgatggga |
309 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908538 |
tgtggcagttggagcaaaagaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatataggaaaggcaataggtttattgatggga |
16908439 |
T |
|
| Q |
310 |
ggtggagaagagtgtttagaaatgaggaaaagagttaaagcacttagtggtgctgcaaagaaagctattgaggttggtggttcttcttatactaagttga |
409 |
Q |
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| T |
16908438 |
ggtggagaagagtgtttagaaatgaggaaaagagttaaagcacttagtggtgctgcaaagaaagctattgaggttggtggttcttcttatactaagttga |
16908339 |
T |
|
| Q |
410 |
aagaactaattgaggagcttaagtcattcaaacttg-aaagattaacaagaaattggtatcagtaacttagtaagaatcattctacattggaactgtgtt |
508 |
Q |
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| T |
16908338 |
aagaactaattgaggagcttaagtcatttaaacttgaaaagattaacaagaaattggtatcagtaacttagtaagaatcattctacattggaactgtgtt |
16908239 |
T |
|
| Q |
509 |
agacctcttattattataaaactatata |
536 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
16908238 |
agacctcttattattataaaactatata |
16908211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 528 - 807
Target Start/End: Complemental strand, 16908029 - 16907746
Alignment:
| Q |
528 |
aactatataagaggggatagcaaagttagtgatgcaattatgtttttaatttatattataccagttaattatgtgtgt--ttttgttttgggaagttaat |
625 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16908029 |
aactatataagaggggatatcaaagttagtgatgcaattatgtttttaatttatattataccagttaattatgtgtgtgtttttgttttgggaagttaat |
16907930 |
T |
|
| Q |
626 |
taagtggttattaggaagttaatttagtggtcattttcaagtgt--cttctgttctgtttttgctttgtaacaatgtctatgtaatcattgtatttgtat |
723 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16907929 |
taagtggttattaggaagttaattaagtggtcattttcaagtgtgtcttctgttctgttttttctttgtaacaatgtctatgtaatcattgtatttgtat |
16907830 |
T |
|
| Q |
724 |
gaaattctgattgagaattcctttgtctagaggttaaatcaataatattattttgttagtcatatatgtttctatcactgtgtt |
807 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16907829 |
gaaattctgattgagaaatcctttgtctagaggttagatcaataatattattttgttagtcatatatgcttctatcactgtgtt |
16907746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 14869926 - 14870359
Alignment:
| Q |
15 |
caaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatg |
114 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
14869926 |
caaaggctatttgatatggggttgggcaccacaactgctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatg |
14870025 |
T |
|
| Q |
115 |
gaaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtgg |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14870026 |
gaaagtgtaaatgcaggtttgtcattggcaacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtgg |
14870125 |
T |
|
| Q |
215 |
cagttggtgcaaaagaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatataggaaaggcaataggtttattgatgggaggtgg |
314 |
Q |
| |
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||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
14870126 |
cagttggagcaaaggaatggagaaactggaatgagtttggggatgatgtggttaagagggatgagataggaaaggcaataggtttattgatgggaggtgg |
14870225 |
T |
|
| Q |
315 |
agaagagtgtttagaaatgaggaaaagagttaaagcacttagtggtgctgcaaagaaagctattgaggttggtggttcttcttatactaagttgaaagaa |
414 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| || |
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| T |
14870226 |
agaagagtgtttagaaatgaggaagaaagctaaagcacttagtggtgctgcaaagaaagctatagaggttggtggttcttcatacactaagttgaaacaa |
14870325 |
T |
|
| Q |
415 |
ctaattgaggagcttaagtcattcaaacttgaaa |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
14870326 |
ctaattgaggagcttaagtcattcaaacttgaaa |
14870359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 687 - 786
Target Start/End: Original strand, 14870505 - 14870607
Alignment:
| Q |
687 |
ctttgtaacaatgtctatgtaatcattgtatttgtatgaaattctgattgag---aattcctttgtctagaggttaaatcaataatattattttgttagt |
783 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||| |||||| | |
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| T |
14870505 |
ctttgtaacaatgtctatgcaaacattgtatttgtatgaaattctgattgagaataatgcctttgtctagaggttagatcaatattattacgttgttatt |
14870604 |
T |
|
| Q |
784 |
cat |
786 |
Q |
| |
|
||| |
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|
| T |
14870605 |
cat |
14870607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 5994979 - 5994714
Alignment:
| Q |
16 |
aaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatgg |
115 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||||||| ||| || |||| |||||| | |||| ||||||||| ||||||||| || | | |
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| T |
5994979 |
aaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttg |
5994880 |
T |
|
| Q |
116 |
aaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggc |
215 |
Q |
| |
|
||||||| |||| || |||||| | || ||||| |||||||||||||| ||||||||||||| | | | ||||||||||| || |||||||| | |
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| T |
5994879 |
aaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcc |
5994780 |
T |
|
| Q |
216 |
agttggtgcaaaagaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatat |
281 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||||||| ||| || ||||| ||||| ||||| |
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| T |
5994779 |
tgtgggagctaaagaatggaggaattggaatgagtttgggagtgaggttgtgaaaagggaagatat |
5994714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 17572461 - 17572316
Alignment:
| Q |
145 |
acttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattgga |
244 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||| ||| | ||||||||||| | ||||| || | ||||| || ||||||||||||||||||| |
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| T |
17572461 |
acttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttggggccaaagaatggagaaattgga |
17572362 |
T |
|
| Q |
245 |
atgagtttggggatgatgtggtgaagagggaggatataggaaaggc |
290 |
Q |
| |
|
||||||||||| ||| || ||||| ||||| || || |||||||| |
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| T |
17572361 |
atgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggc |
17572316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 17620329 - 17620367
Alignment:
| Q |
217 |
gttggtgcaaaagaatggagaaattggaatgagtttggg |
255 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |
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| T |
17620329 |
gttggggctaaagaatggagaaattggaatgagtttggg |
17620367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 290
Target Start/End: Complemental strand, 14710056 - 14709913
Alignment:
| Q |
147 |
ttggccattatttgctgaacagtttttcaatgaga-gattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattggaa |
245 |
Q |
| |
|
|||||| || |||||||| || ||||| ||||||| |||| || |||||||||| | ||||| ||| | ||||| || |||||||||||||||||||| |
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| T |
14710056 |
ttggcctttgtttgctgatcaattttttaatgagaagattatta-ttgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaa |
14709958 |
T |
|
| Q |
246 |
tgagtttggggatgatgtggtgaagagggaggatataggaaaggc |
290 |
Q |
| |
|
|||||||||| ||| || ||||| ||||| || || |||||||| |
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|
| T |
14709957 |
tgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggc |
14709913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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