View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_low_8 (Length: 758)
Name: NF18068_low_8
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_8 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 703; Significance: 0; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 14 - 741
Target Start/End: Complemental strand, 1969226 - 1968493
Alignment:
| Q |
14 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969226 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
1969127 |
T |
|
| Q |
114 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagat------ggtaaaaactgcaaagtgtcaatgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1969126 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatccagatggtaaaaactgcaaagtgtcaatat |
1969027 |
T |
|
| Q |
208 |
cattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969026 |
cattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccag |
1968927 |
T |
|
| Q |
308 |
ctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968926 |
ctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaag |
1968827 |
T |
|
| Q |
408 |
ccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttatag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1968826 |
ccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttatag |
1968727 |
T |
|
| Q |
508 |
gtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatct |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968726 |
gtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatct |
1968627 |
T |
|
| Q |
608 |
atcttgagctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968626 |
atcttgagctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctca |
1968527 |
T |
|
| Q |
708 |
tccagcttaggcaaatagatgctccaagcaagtg |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1968526 |
tccagcttaggcaaatagatgctccaagcaagtg |
1968493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 17 - 741
Target Start/End: Original strand, 2007798 - 2008522
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
|||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2007798 |
aggccacgtgattaacggcacaccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatt |
2007897 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2007898 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctg |
2007997 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
2007998 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaat |
2008097 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
||| || |||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2008098 |
ttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccattagca |
2008197 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatct |
516 |
Q |
| |
|
|||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
2008198 |
tcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccatct |
2008297 |
T |
|
| Q |
517 |
ccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttgagc |
616 |
Q |
| |
|
| | ||| |||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2008298 |
ctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttgagc |
2008397 |
T |
|
| Q |
617 |
tacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctta |
716 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2008398 |
tatgctcaagaaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagctta |
2008497 |
T |
|
| Q |
717 |
ggcaaatagatgctccaagcaagtg |
741 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
2008498 |
ggcaaatagaagcaccaagcaagtg |
2008522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 741
Target Start/End: Original strand, 2004418 - 2005142
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || || | ||||||||||||||||||| |
|
|
| T |
2004418 |
aggccatgttattagtggcacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatt |
2004517 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||| || |
|
|
| T |
2004518 |
tgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttctctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtg |
2004617 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2004618 |
ctgaaaaatatcctgcactagatgaactactacttggtgctcgcaaaacccacaagaatatcttattactcaattccaaacccaaagccagctcaacaat |
2004717 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| | ||||| ||||| |||| | | |
|
|
| T |
2004718 |
ttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatgatta |
2004817 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatct |
516 |
Q |
| |
|
||||||| |||||| | || |||| || ||||||||||||||||| |||||||| |||||||| || ||||||||| |||||||||| ||||||| |
|
|
| T |
2004818 |
gcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatct |
2004917 |
T |
|
| Q |
517 |
ccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttgagc |
616 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
2004918 |
ccatttctaggaagctattaacaagaacaccatcagcaaaacttaaaagtttaagaagtgcgaggaattgtttgtaagcttgacttgacctatcttgagt |
2005017 |
T |
|
| Q |
617 |
tacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctta |
716 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
2005018 |
tgggctcatgagatccctgccatggattggtacacaacctggtatttttataggcactggtatatctccatactcacatgatgtttcttcatccaactta |
2005117 |
T |
|
| Q |
717 |
ggcaaatagatgctccaagcaagtg |
741 |
Q |
| |
|
|||||||||| | |||||||||||| |
|
|
| T |
2005118 |
ggcaaatagaagatccaagcaagtg |
2005142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 741
Target Start/End: Original strand, 2011413 - 2012137
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||| ||||| ||||| |||| ||||| ||| ||||||| || |||| ||| | ||||| |||||| |
|
|
| T |
2011413 |
aggccatgtgattagtggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatt |
2011512 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||| || |||| |||| ||||||| || |
|
|
| T |
2011513 |
tgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtg |
2011612 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||| |||||||||| |||||| |||||| | |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2011613 |
ctgaaagatatgctgcattagatgaactactacttggtgctcgcacaacccataggaatttctgattactcaattccaaacccaaagccagctcaacaat |
2011712 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| || ||||| || ||||| | |||||||||||| ||||||||| |
|
|
| T |
2011713 |
ttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagca |
2011812 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatct |
516 |
Q |
| |
|
|||||| | |||| |||| |||| ||||| || |||||||||||||| || | ||||||| ||||||| |||||| ||| | || ||||||||||||| | |
|
|
| T |
2011813 |
tcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccattt |
2011912 |
T |
|
| Q |
517 |
ccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttgagc |
616 |
Q |
| |
|
||| ||| | |||||||||||||| |||||||||||||||||||||| ||||| | || | ||||||| ||||||| |||||||||||||||||||| | |
|
|
| T |
2011913 |
ccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttgaac |
2012012 |
T |
|
| Q |
617 |
tacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctta |
716 |
Q |
| |
|
|| | ||||||||||||||||||||| |||||| ||||| |||| ||| ||||||||||| | |||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
2012013 |
tatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaactta |
2012112 |
T |
|
| Q |
717 |
ggcaaatagatgctccaagcaagtg |
741 |
Q |
| |
|
|||||||||| ||||||||| |||| |
|
|
| T |
2012113 |
ggcaaatagaagctccaagccagtg |
2012137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 606
Target Start/End: Complemental strand, 1965281 - 1964692
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| ||||| ||| ||||||| || |||||||| | ||||| |||||| |
|
|
| T |
1965281 |
aggccatgtgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt |
1965182 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |||| |||||||| || |
|
|
| T |
1965181 |
tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtg |
1965082 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||| || |||||| |||||| | |||||||||||| || || | |||||||| ||||| |
|
|
| T |
1965081 |
ctgaaagatatgctgcactagatgaactactacttggtgctcacacaacccataggaatttctgattactcaattctaaccccagagccagctgaacaat |
1964982 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||| || ||||| | |||||||||||| ||||||||| |
|
|
| T |
1964981 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagca |
1964882 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatct |
516 |
Q |
| |
|
||| | |||| |||| |||| | ||| || ||||||||||||||||| | ||||||| ||||||| |||||| || | | ||||||||||||| | |
|
|
| T |
1964881 |
tcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccattt |
1964782 |
T |
|
| Q |
517 |
ccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatc |
606 |
Q |
| |
|
||| ||| | |||||||||||||| |||||||||||||||||||||| ||||| | || | ||||||||||||||| |||||||||||| |
|
|
| T |
1964781 |
ccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatc |
1964692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 17 - 711
Target Start/End: Complemental strand, 1963611 - 1962923
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| || |||||||| || ||||||| |||||| |
|
|
| T |
1963611 |
aggccaagtgattagtggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatt |
1963512 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||||||| || |||||||||| || ||| | |||| ||||||||||||||||| |||||||||||||||||||| |||| |||| ||| || |
|
|
| T |
1963511 |
tgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaaaactgtaaaggatcaa---catcagatg |
1963415 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||| | ||| | | || | ||||| || |||| | |||||| ||||||| | |||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1963414 |
ctgaaagatatgcagcatttgctg---tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaat |
1963318 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
|||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| ||||| |||||||| | ||||||||| || ||||||| |
|
|
| T |
1963317 |
ttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttattagca |
1963218 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatct |
516 |
Q |
| |
|
|||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||| | |||||| ||| | | |
|
|
| T |
1963217 |
tcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggaccctttt |
1963118 |
T |
|
| Q |
517 |
ccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttgagc |
616 |
Q |
| |
|
| | ||||||||||||||||| || |||||||||| || || || || || | | |||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
1963117 |
caatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagc |
1963018 |
T |
|
| Q |
617 |
tacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
711 |
Q |
| |
|
|| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1963017 |
ta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
1962923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 2014818 - 2015279
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
2014818 |
aggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt |
2014917 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||||||| || |||||||||| |||||| | |||| ||||| ||||||||||||||||| || |||||||| || |||| ||||| ||| || |
|
|
| T |
2014918 |
tgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa---catcagatg |
2015014 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||| | ||| | | || | |||| |||| || | |||||| ||||||| | |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2015015 |
ctgaaagatatgcagcattggctg---tattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaat |
2015111 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| ||||||| |||||| |||||| | ||||| |||||||| |||||||| || || ||||||| |
|
|
| T |
2015112 |
ttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttattagca |
2015211 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttcc |
484 |
Q |
| |
|
|||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| |
|
|
| T |
2015212 |
tcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttcc |
2015279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 2018201 - 2018637
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
2018201 |
aggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt |
2018300 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||||||| || |||||||||| |||||| | |||| ||||| |||||||||||||||| || |||||||| || |||| ||||| ||| || |
|
|
| T |
2018301 |
tgaatctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa---catcagatg |
2018397 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||| | ||| | | || | |||| |||| || | |||||| ||||||| | |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2018398 |
ctgaaagatatgcagcattggctg---tattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaat |
2018494 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagca |
416 |
Q |
| |
|
|||||| || |||||||| ||||||||||| ||||| |||||||||||||| |||| |||||||| |||||||| |||||||||| ||| |||||| || |
|
|
| T |
2018495 |
ttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccattatca |
2018594 |
T |
|
| Q |
417 |
tcatcacctgaacttgtttctgtttggataattggtccaacag |
459 |
Q |
| |
|
|||||||| || | ||| |||||||||||||||||||||| |
|
|
| T |
2018595 |
tcatcacccgatttggttggcgtttggataattggtccaacag |
2018637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 2437023 - 2436704
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||| |||||| |
|
|
| T |
2437023 |
aggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatt |
2436924 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
|||| ||| || |||||||||| |||||| | |||| |||||||||||||| | ||||||| |||||||||| ||||||| ||||| ||||||| || |
|
|
| T |
2436923 |
tgaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtg |
2436824 |
T |
|
| Q |
217 |
ctgaaa--ga----tatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctc |
310 |
Q |
| |
|
|||||| || ||| |||||||||||||||| ||| | ||||||| | |||||| ||||||| | ||||||| |||||| ||| ||||||||||| |
|
|
| T |
2436823 |
ctgaaactgaaaagtatgctgcactagatgaactactatttggtgctcttacaacccataagaatttctgattactcgattccagaccgaaagccagctc |
2436724 |
T |
|
| Q |
311 |
cacaatttgttcgtgtgaaa |
330 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
2436723 |
aacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 360 - 558
Target Start/End: Complemental strand, 2433163 - 2432965
Alignment:
| Q |
360 |
aaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacag |
459 |
Q |
| |
|
|||||||||||||| || || | ||||||||| | |||||||||||| |||||||||||| | ||||||||| ||| ||||| || |||||||||| |
|
|
| T |
2433163 |
aaaactgagcaaggttgttggtcatccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacag |
2433064 |
T |
|
| Q |
460 |
gatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaaaaacaccatcagcaaaac |
558 |
Q |
| |
|
||||||| |||| || |||||||| || ||| ||| | | ||||||| ||| | |||| ||| | |||||||||||||| |||||||||| |||||| |
|
|
| T |
2433063 |
gatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaac |
2432965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 726
Target Start/End: Original strand, 2018765 - 2018904
Alignment:
| Q |
587 |
tttgtaaacttgacttgatctatcttgagctacgctcaaga-gatccctgccatggattggtacacagcctggtatttttataggctctggtatatctct |
685 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||| | ||||| ||||| |||||||||||||||||||||| ||||||||| | | |||| | |
|
|
| T |
2018765 |
tttgtaagattgacttgatctatcttgagcttgg-tcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatcttt |
2018863 |
T |
|
| Q |
686 |
atactcacatgatgtttcctcatccagcttaggcaaataga |
726 |
Q |
| |
|
|||| |||||||||||||| || || ||| ||||||||| |
|
|
| T |
2018864 |
gtactgacatgatgtttccttattcaacttgagcaaataga |
2018904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 3770193 - 3770260
Alignment:
| Q |
50 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
117 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3770193 |
actctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3770260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 10201869 - 10201937
Alignment:
| Q |
33 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgag |
101 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||||||||| ||| || || ||||||||| |
|
|
| T |
10201869 |
ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgag |
10201937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 10208942 - 10209010
Alignment:
| Q |
33 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgag |
101 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||||||||| ||| || || ||||||||| |
|
|
| T |
10208942 |
ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgag |
10209010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 3708002 - 3707935
Alignment:
| Q |
50 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
117 |
Q |
| |
|
||||||||| || |||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3708002 |
actctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3707935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 726
Target Start/End: Original strand, 2015372 - 2015521
Alignment:
| Q |
577 |
ggaggaagtgtttgtaaacttgacttgatctatcttgagctacgctc-aagagatccctgccatggattggtacacagcctggtatttttataggctctg |
675 |
Q |
| |
|
|||| |||| ||||||| |||||| |||||||||||||||| |||| || ||||||| ||||| || || |||| |||||||||| |||||| | | |
|
|
| T |
2015372 |
ggagtaagtatttgtaagattgactggatctatcttgagcta-gctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccag |
2015470 |
T |
|
| Q |
676 |
gtatatctctatactcacatgatgtttcctcatccagcttaggcaaataga |
726 |
Q |
| |
|
| | |||||| ||||| ||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
2015471 |
gaagatctctgtactcgcatgatgtttccttatctaacttgagcaaataga |
2015521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 3777860 - 3778002
Alignment:
| Q |
50 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaa |
149 |
Q |
| |
|
|||||| || || |||||||| |||||||| || || |||||||| |||| |||| |||||||||||| ||||||| ||||| | | || ||| || |
|
|
| T |
3777860 |
actctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctgcggggcccaaaaaggaacaactaac |
3777959 |
T |
|
| Q |
150 |
cctttctccttggttctctccaagaacccagatggtaaaaact |
192 |
Q |
| |
|
|||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
3777960 |
ccttgttctttggttctctctaagaacccttgtggtaaaaact |
3778002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 33005106 - 33005188
Alignment:
| Q |
51 |
ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgccca |
133 |
Q |
| |
|
||||| || ||||||||||| |||||||| || || ||||||||| |||| |||| |||||||||||| |||| || ||||| |
|
|
| T |
33005106 |
ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtggtgccca |
33005188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 5902790 - 5902402
Alignment:
| Q |
14 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||| ||||||| || |
|
|
| T |
5902790 |
caaaggccatgtgattagtggcacaccatgcatcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagt |
5902691 |
T |
|
| Q |
114 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcatttt |
213 |
Q |
| |
|
||| |||||| || |||||||||| |||||| | |||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
5902690 |
gtttcaatctgaggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcatttt |
5902591 |
T |
|
| Q |
214 |
ctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccac |
313 |
Q |
| |
|
|||||||||||||| | |||| | |||| ||||| ||||||| | |||||| ||||||| | |||||||||||||||||| | ||||| ||| | |
|
|
| T |
5902590 |
ctgctgaaagatatgcaccactggctgaa---ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatc |
5902494 |
T |
|
| Q |
314 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactcca |
405 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || ||||| |||||||||||||| ||||| || ||||||| ||||| | ||||||||||| |
|
|
| T |
5902493 |
aatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca |
5902402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 5906271 - 5905886
Alignment:
| Q |
17 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||||||||| ||||| |||| ||||||||| ||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
5906271 |
aggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatt |
5906172 |
T |
|
| Q |
117 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
216 |
Q |
| |
|
| |||||| || |||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||| || |||| || |||| || |
|
|
| T |
5906171 |
tcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtg |
5906072 |
T |
|
| Q |
217 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
316 |
Q |
| |
|
||||||||||| | ||| | |||| ||||| ||||||| | |||||| ||||||| | |||||||||||||||||| | ||| ||||| || | |
|
|
| T |
5906071 |
ctgaaagatatgcaccacatgctgaa---ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagt |
5905975 |
T |
|
| Q |
317 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactcca |
405 |
Q |
| |
|
|||||| |||||||||| |||||| || || ||||| |||||||||||||| ||||||||||||||||| ||||| | || |||||||| |
|
|
| T |
5905974 |
ttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactcca |
5905886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 711
Target Start/End: Complemental strand, 5902171 - 5902102
Alignment:
| Q |
642 |
attggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
711 |
Q |
| |
|
||||||||||| |||||| || ||||| ||||| | |||||| ||||||||||||||||||| ||||| |
|
|
| T |
5902171 |
attggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatcca |
5902102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 667 - 741
Target Start/End: Complemental strand, 18189931 - 18189857
Alignment:
| Q |
667 |
taggctctggtatatctctatactcacatgatgtttcctcatccagcttaggcaaatagatgctccaagcaagtg |
741 |
Q |
| |
|
|||||||||||| || ||| |||||||||| |||||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaagctccaagccagtg |
18189857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 3557 - 3516
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3557 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
3516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 4461417 - 4461458
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4461417 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
4461458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 4622436 - 4622476
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattg |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4622436 |
ggttgaattccatccacaatgagtcaagaatccaccaattg |
4622476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 4557419 - 4557460
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4557419 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4557460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 4592525 - 4592566
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4592525 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4592566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 4490191 - 4490152
Alignment:
| Q |
61 |
ttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4490191 |
ttgagttccatccacaatgagtcaagaatccaccaattga |
4490152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 4267004 - 4266966
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaat |
97 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4267004 |
ggttgaattccatccgcaatgagtcaagaatccaccaat |
4266966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 4299664 - 4299618
Alignment:
| Q |
54 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4299664 |
tcaatggttgagttccatccacagtgagtcaagaatccaccaattga |
4299618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 4626240 - 4626286
Alignment:
| Q |
54 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4626240 |
tcaatggttgagttccatccacaatgagttaagaatccaccaattga |
4626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 4493250 - 4493287
Alignment:
| Q |
60 |
gttgaattccagccacaatgagtcaagaatccaccaat |
97 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4493250 |
gttgagttccatccacaatgagtcaagaatccaccaat |
4493287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 4506151 - 4506192
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4506151 |
ggttgagttccatccgcaatgagtcaagaatccaccaattga |
4506192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 4585930 - 4585971
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4585930 |
ggttgagttccatccacagtgagtcaagaatccaccaattga |
4585971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 4613556 - 4613515
Alignment:
| Q |
59 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4613556 |
ggttgagttccatccacaatgagtcaagaatccgccaattga |
4613515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 41511490 - 41511444
Alignment:
| Q |
54 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
41511490 |
tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga |
41511444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 3086715 - 3086755
Alignment:
| Q |
60 |
gttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3086715 |
gttgagttccatccacaatgagtcaagaatccaccaattga |
3086755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 4529 - 4483
Alignment:
| Q |
54 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
100 |
Q |
| |
|
|||| |||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4529 |
tcaatggttgagttccatccgcaatgagtcaagaatccaccaattga |
4483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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