View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_low_80 (Length: 303)

Name: NF18068_low_80
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_low_80
NF18068_low_80
[»] chr4 (6 HSPs)
chr4 (24-259)||(9567326-9567579)
chr4 (212-303)||(9590202-9590293)
chr4 (9-77)||(6942865-6942935)
chr4 (261-303)||(9567759-9567801)
chr4 (10-95)||(28801546-28801633)
chr4 (15-75)||(12333994-12334054)
[»] scaffold0228 (3 HSPs)
scaffold0228 (10-95)||(6318-6406)
scaffold0228 (10-95)||(13900-13988)
scaffold0228 (10-95)||(23852-23940)
[»] chr3 (9 HSPs)
chr3 (10-95)||(11832274-11832362)
chr3 (15-93)||(12252083-12252164)
chr3 (15-77)||(4657439-4657501)
chr3 (10-81)||(17580653-17580724)
chr3 (34-77)||(30104272-30104315)
chr3 (16-70)||(19631320-19631374)
chr3 (15-75)||(11829211-11829271)
chr3 (10-101)||(19659140-19659234)
chr3 (107-155)||(45801197-45801245)
[»] chr1 (7 HSPs)
chr1 (15-102)||(21424022-21424112)
chr1 (15-77)||(23475205-23475267)
chr1 (15-75)||(18621245-18621305)
chr1 (10-77)||(21720992-21721059)
chr1 (27-77)||(21981571-21981621)
chr1 (28-77)||(20408755-20408804)
chr1 (15-77)||(22615863-22615925)
[»] chr6 (5 HSPs)
chr6 (15-77)||(14894541-14894603)
chr6 (10-77)||(16896789-16896856)
chr6 (15-77)||(18027850-18027912)
chr6 (10-102)||(14355775-14355870)
chr6 (31-75)||(9296631-9296675)
[»] scaffold0111 (1 HSPs)
scaffold0111 (15-95)||(25292-25375)
[»] chr8 (5 HSPs)
chr8 (15-95)||(24625617-24625700)
chr8 (9-77)||(25281802-25281870)
chr8 (10-77)||(23539680-23539747)
chr8 (16-77)||(18830003-18830064)
chr8 (19-95)||(20496155-20496234)
[»] chr5 (8 HSPs)
chr5 (26-102)||(19315695-19315774)
chr5 (28-102)||(22446795-22446872)
chr5 (15-77)||(17170325-17170387)
chr5 (15-77)||(24516764-24516826)
chr5 (16-77)||(19858770-19858831)
chr5 (10-77)||(10176041-10176106)
chr5 (15-77)||(22826954-22827016)
chr5 (15-68)||(31480293-31480345)
[»] scaffold0039 (1 HSPs)
scaffold0039 (10-77)||(8613-8680)
[»] chr7 (5 HSPs)
chr7 (10-77)||(11773310-11773377)
chr7 (9-69)||(29740580-29740639)
chr7 (10-77)||(13761045-13761112)
chr7 (32-77)||(18083283-18083328)
chr7 (106-150)||(1509969-1510013)
[»] chr2 (3 HSPs)
chr2 (27-77)||(20511079-20511129)
chr2 (15-77)||(28774988-28775050)
chr2 (26-77)||(18996005-18996056)
[»] scaffold0964 (1 HSPs)
scaffold0964 (10-92)||(2915-3000)
[»] scaffold0050 (1 HSPs)
scaffold0050 (15-77)||(77993-78055)
[»] scaffold0018 (1 HSPs)
scaffold0018 (15-77)||(61849-61911)
[»] scaffold0014 (1 HSPs)
scaffold0014 (15-77)||(202225-202286)
[»] scaffold0412 (1 HSPs)
scaffold0412 (15-68)||(3972-4025)
[»] scaffold0007 (1 HSPs)
scaffold0007 (32-77)||(204117-204162)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 9567326 - 9567579
Alignment:
Q  24 atagagacaaataatcacatacaaacacatataaccacacataataactaatta---taattctagtgaaaatcgagctgtttaagggaccatattcgta 120  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||   |||||||||||||||||||| ||||||||||||||||||||||    
T  9567326 atagagacaaataatcacatacagacacatataaccacacataataattaattaaaataattctagtgaaaatcgagttgtttaagggaccatattcgta 9567425  T
Q  121 accacgtgtaaatagaagtatataataatagtatagtagtagtnnnnnnnnnttgaaaaattggggggaccacagcca---------------cccctgg 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||| |||||               |||||||    
T  9567426 accacgtgtaaataaaagtatataataatagtatagtagtagtaaaaaaaatttgaaaaattggggggaccatagccacccctggtctctccgcccctgg 9567525  T
Q  206 ttacaaatagcttaaaattcatctgcgagtgagaatagacacgttaaattaaaa 259  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  9567526 ttacgaatagcttaaaattcatctgcgagcgagaatagacgcgttaaattaaaa 9567579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 9590293 - 9590202
Alignment:
Q  212 atagcttaaaattcatctgcgagtgagaatagacacgttaaattaaaagacttgtagggcaagttagagtagataaaacatttgcatgaata 303  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||    
T  9590293 atagcttaaaattcatctgcgagcgagaatagacgcgttaaattaaaaaacttgcagggaaagttagagtagataaaacatgtgcatgaata 9590202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 6942935 - 6942865
Alignment:
Q  9 tcgaagaaaatacatatagagacaaataat--cacatacaaacacatataaccacacataataactaatta 77  Q
    ||||| |||||||||| |||||||||||||  |||| |||| ||||||||| |||||||||||| ||||||    
T  6942935 tcgaataaaatacatacagagacaaataatcacacacacaagcacatataaacacacataataaataatta 6942865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 9567759 - 9567801
Alignment:
Q  261 acttgtagggcaagttagagtagataaaacatttgcatgaata 303  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  9567759 acttgtagggcaagttagagtagataaaacatgtgcaagaata 9567801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 28801546 - 28801633
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||| |||||||| | ||||||||||| ||| |||||| ||||||||| |||||||||||| |||||   |||||||||| ||||||||    
T  28801546 cgaacaaaatacacacagagacaaata-tcatatacaagcacatataaacacacataataattaattaaaataattctagcgaaaatcg 28801633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 12334054 - 12333994
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaat 75  Q
    |||||||| | | |||||| |||||||| ||| |||||||||| |||||||||||| ||||    
T  12334054 aaaatacacacatagacaattaatcacaaacagacacatataaacacacataataattaat 12333994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 6406 - 6318
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||||| |||||||||||| |||||   |||||||||| ||||||||    
T  6406 cgaataaaatacacacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcg 6318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 13988 - 13900
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||||| |||||||||||| |||||   |||||||||| ||||||||    
T  13988 cgaataaaatacacacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcg 13900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 23940 - 23852
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||||| |||||||||||| |||||   |||||||||| ||||||||    
T  23940 cgaataaaatacacacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcg 23852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 11832362 - 11832274
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||||| || |||||| || |||||   |||||||||| ||||||||    
T  11832362 cgaataaaatacacatagagacaaataatcacatacaagcacatataaacatacataaaaattaattaaaataattctagcgaaaatcg 11832274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 12252164 - 12252083
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaat 93  Q
    |||||||| |||||||||||||||| ||||||| ||||||| | |||||||||||| |||||   |||||||||| ||||||    
T  12252164 aaaatacacatagagacaaataatcgcatacaagcacatatgaacacacataataattaattaaaataattctagcgaaaat 12252083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 4657439 - 4657501
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| || ||||||| ||||||||||||| ||||||||| |||||||||||| ||||||    
T  4657439 aaaatacacatggagacaattaatcacatacaagcacatataaacacacataataaataatta 4657501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 17580724 - 17580653
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaattataat 81  Q
    |||| |||||||| | | ||||||||||||||| |||||| ||||||| |||||||||||| ||||| ||||    
T  17580724 cgaataaaatacacaaatagacaaataatcacacacaaacgcatataaacacacataataaataattctaat 17580653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 30104315 - 30104272
Alignment:
Q  34 ataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||||||||||||||||||| |||||||||| | ||||||    
T  30104315 ataatcacatacaaacacatataaacacacataatcattaatta 30104272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 19631374 - 19631320
Alignment:
Q  16 aaatacatatagagacaaataatcacatacaaacacatataaccacacataataa 70  Q
    ||||||| | |||||||| |||||||| |||| ||||||||| ||||||||||||    
T  19631374 aaatacacacagagacaattaatcacacacaagcacatataaacacacataataa 19631320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 11829211 - 11829271
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaat 75  Q
    |||||||| | ||||| ||||||||||||||||  | |||||| |||||||||||| ||||    
T  11829211 aaaatacacacagagataaataatcacatacaagaatatataaacacacataataattaat 11829271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 19659234 - 19659140
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcgagctgt 101  Q
    |||| |||||||| | | |||||| |||||||| | || ||||||||| |||||||||||| |||||   |||||||||| ||||| || |||||    
T  19659234 cgaataaaatacacacatagacaattaatcacacaaaagcacatataaacacacataataaataattaaaataattctagcgaaaaacgggctgt 19659140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 45801245 - 45801197
Alignment:
Q  107 ggaccatattcgtaaccacgtgtaaatagaagtatataataatagtata 155  Q
    ||||||||||| | ||||  ||||||||| |||||||||||||||||||    
T  45801245 ggaccatattcatgaccatatgtaaatagtagtatataataatagtata 45801197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 21424022 - 21424112
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcgagctgtt 102  Q
    |||||||| | || |||| |||||||||||||| ||||||||| |||||||||||| |||||   |||||||||| ||||||||| |||||    
T  21424022 aaaatacacaaagggacagataatcacatacaagcacatataaacacacataataattaattaaaataattctagcgaaaatcgaactgtt 21424112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 23475267 - 23475205
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | |||||||| ||||||||||||| ||||||||| |||||||||||| ||||||    
T  23475267 aaaatacacacagagacaattaatcacatacaagcacatataatcacacataataaataatta 23475205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 18621305 - 18621245
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaat 75  Q
    |||||||| | |||||||| ||||||||||||| ||||||||| |||||||||||| ||||    
T  18621305 aaaatacacacagagacaattaatcacatacaagcacatataaacacacataataaataat 18621245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 21720992 - 21721059
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| | |||||||| ||||||||||| | ||||||||| |||||||||||| ||||||    
T  21720992 cgaataaaatacacacagagacaattaatcacatacgagcacatataaacacacataataaataatta 21721059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 21981571 - 21981621
Alignment:
Q  27 gagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||||||||||||||||| ||||||| | |||||||||||| ||||||    
T  21981571 gagacaaataatcacatacaagcacatatgaacacacataataattaatta 21981621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 20408755 - 20408804
Alignment:
Q  28 agacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||||||||||| ||||| |||||||| |||||||||||| ||||||    
T  20408755 agacaaataatcacacacaaaaacatataaacacacataataagtaatta 20408804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 22615863 - 22615925
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||||  || ||| |||||||||||||||| | ||||||| |||||||||||| ||||||    
T  22615863 aaaatacacttaaagataaataatcacatacaagcgcatataaacacacataataaataatta 22615925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 14894541 - 14894603
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| || |||||||||||||| |||||| ||||||||| |||||||||||| ||||||    
T  14894541 aaaatacacattgagacaaataatcatatacaagcacatataaacacacataataaataatta 14894603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 16896789 - 16896856
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| | |||||||| | ||||||||||| ||||||||| |||||||||||| ||||||    
T  16896789 cgaataaaatacacacagagacaattcatcacatacaagcacatataaacacacataataaataatta 16896856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 18027912 - 18027850
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | ||||| ||||||||||| |||| ||||||||| |||||||||||| ||||||    
T  18027912 aaaatacacacagagataaataatcacacacaagcacatataaacacacataataaataatta 18027850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 14355775 - 14355870
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcgagctgtt 102  Q
    |||| |||||||| | |||| |||  ||||||| |||| ||||||||| |||||||||||| |||||   |||||| ||| |||||||||||||||    
T  14355775 cgaataaaatacacacagaggcaatcaatcacacacaagcacatataaacacacataataaataattaaaataattttagcgaaaatcgagctgtt 14355870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 9296631 - 9296675
Alignment:
Q  31 caaataatcacatacaaacacatataaccacacataataactaat 75  Q
    ||||||||||||||||| |||||||||  ||||||||||| ||||    
T  9296631 caaataatcacatacaagcacatataaatacacataataaataat 9296675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 25292 - 25375
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||||||| | | |||||| ||||||||||||| |||||||||  ||||||||||| |||||   |||||||||||||||||||    
T  25292 aaaatacacacacagacaattaatcacatacaagcacatataaaaacacataataaataattaaaataattctagtgaaaatcg 25375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 24625617 - 24625700
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||||||| | |||||||||||||||||||||| ||||||||| |||| ||||||| ||| |   |||||||||| ||||||||    
T  24625617 aaaatacacacagagacaaataatcacatacaagcacatataaacacatataataaataaataaaataattctagcgaaaatcg 24625700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 25281802 - 25281870
Alignment:
Q  9 tcgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||| |||||||| | | |||||| ||||||||||||| ||||||||| |||||||||||| ||||||    
T  25281802 tcgaataaaatacacacaaagacaattaatcacatacaagcacatataaacacacataataaataatta 25281870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 23539747 - 23539680
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| | | ||| |||||||||||||||| | ||||||| |||||||||||| ||||||    
T  23539747 cgaataaaatacacacatagataaataatcacatacaagcgcatataaacacacataataaataatta 23539680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 18830064 - 18830003
Alignment:
Q  16 aaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||| | |||||||| |||| |||||||| |||||||||  ||||||||||| ||||||    
T  18830064 aaatacacacagagacaattaattacatacaagcacatataaatacacataataaataatta 18830003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 20496234 - 20496155
Alignment:
Q  19 tacatatagagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcg 95  Q
    |||||| |||||||| |||||| | |||| |||| |||| |||||||||||| |||||   |||||||||| ||||||||    
T  20496234 tacatacagagacaattaatcatacacaagcacaaataaacacacataataattaattaaaataattctagcgaaaatcg 20496155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 19315774 - 19315695
Alignment:
Q  26 agagacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcgagctgtt 102  Q
    |||||||||||||||||||||| ||||||||| |||||||||| | |||||   |||||| || |||||| |||||||||    
T  19315774 agagacaaataatcacatacaagcacatataaacacacataatgaataattaaaataattatattgaaaaacgagctgtt 19315695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 22446795 - 22446872
Alignment:
Q  28 agacaaataatcacatacaaacacatataaccacacataataactaatt---ataattctagtgaaaatcgagctgtt 102  Q
    ||||||| ||||||||||| |||||||||| |||||||||||| ||| |   |||||||||| |||||||| ||||||    
T  22446795 agacaaacaatcacatacacacacatataaacacacataataattaaataaaataattctagcgaaaatcgggctgtt 22446872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 17170325 - 17170387
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | |||||||| ||||||||||||| | ||||||| |||||||||||| ||||||    
T  17170325 aaaatacacacagagacaattaatcacatacaagcgcatataaacacacataataaataatta 17170387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 24516764 - 24516826
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | |||||||| ||||||||||||| ||||||||| | |||||||||| ||||||    
T  24516764 aaaatacacacagagacaattaatcacatacaagcacatataaacgcacataataattaatta 24516826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 19858831 - 19858770
Alignment:
Q  16 aaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||| | ||||||||||||||||| ||||   |||||||||||||||||||| ||||||    
T  19858831 aaatacacacagagacaaataatcacacacaagagcatataaccacacataataaataatta 19858770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 10176106 - 10176041
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| || || | ||||||||||||||||||||||||||  ||||||||||| ||||||    
T  10176106 cgaaaaaaatacacatcgatataaataatcacatacaaacacatataa--acacataataaataatta 10176041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 22827016 - 22826954
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | |||||| |||||||||||||||  |||||||  |||||||||||| ||||||    
T  22827016 aaaatacacacagagacgaataatcacatacaagaacatatagacacacataataattaatta 22826954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 31480293 - 31480345
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataat 68  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||    
T  31480293 aaaatacatacaga-acaaataatcatatacaagcacatataaacacacataat 31480345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 8613 - 8680
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| | |||||| | ||||||||||||| ||||||||| |||||||||||| ||||||    
T  8613 cgaataaaatacacacagagacgagtaatcacatacaagcacatataaacacacataataaataatta 8680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 11773377 - 11773310
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| | ||||||||||| ||||| |||| ||||||||| |||||||||||| ||||||    
T  11773377 cgaataaaatacacacagagacaaatagtcacacacaagcacatataaacacacataataaataatta 11773310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 29740639 - 29740580
Alignment:
Q  9 tcgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataata 69  Q
    ||||| |||||||| | | ||||||||||||||||| |||||||||||| |||||||||||    
T  29740639 tcgaataaaatacacacatagacaaataatcacata-aaacacatataagcacacataata 29740580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 13761112 - 13761045
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||| |||||||| | | ||||||||||||||||||||  ||||||||  ||||||||||| ||||||    
T  13761112 cgaataaaatacacacatagacaaataatcacatacaagtacatataaatacacataataaataatta 13761045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 18083283 - 18083328
Alignment:
Q  32 aaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||||||||||| ||||||||| |||| ||||||| ||||||    
T  18083283 aaataatcacatacaagcacatataaacacatataataaataatta 18083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 1510013 - 1509969
Alignment:
Q  106 gggaccatattcgtaaccacgtgtaaatagaagtatataataata 150  Q
    |||||||||||| |||||| |||||||||| | ||||||||||||    
T  1510013 gggaccatattcttaaccatgtgtaaatagcattatataataata 1509969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 20511079 - 20511129
Alignment:
Q  27 gagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| ||||||    
T  20511079 gagacaattaatcacatacaaacacatataaacatacataataaataatta 20511129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 28774988 - 28775050
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | | ||||||||||||| |||||||||||||||| ||||| |||||| ||||||    
T  28774988 aaaatacacacacagacaaataatcatatacaaacacatataatcacacgtaataaataatta 28775050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 18996005 - 18996056
Alignment:
Q  26 agagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||||||||||| |||||| |||| |||| |||||||||||| ||||||    
T  18996005 agagacaaataatcatatacaagcacaaataaacacacataataattaatta 18996056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 2915 - 3000
Alignment:
Q  10 cgaagaaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta---taattctagtgaaaa 92  Q
    |||| |||||||| | | ||||||||||||| |||||| ||||||||| || ||| ||||| ||||||   |||||||||||||||    
T  2915 cgaataaaatacacacaaagacaaataatcagatacaagcacatataaacatacaaaataaataattaaattaattctagtgaaaa 3000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 77993 - 78055
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | | |||||||||||||||||||| ||| |||||  ||||||||||| ||||||    
T  77993 aaaatacacacacagacaaataatcacatacaagcacctataaatacacataataaataatta 78055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 61849 - 61911
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | |||||||| |||||||||| ||||| |||||  |||||||||||| ||||||    
T  61849 aaaatacacacagagacaattaatcacatataaacaaatatagacacacataataaataatta 61911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 202286 - 202225
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    |||||||| | ||||||||||| |||||||||| |||||||||  ||||||||||| ||||||    
T  202286 aaaatacacacagagacaaata-tcacatacaagcacatataaatacacataataaataatta 202225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 3972 - 4025
Alignment:
Q  15 aaaatacatatagagacaaataatcacatacaaacacatataaccacacataat 68  Q
    |||||||| | |||||||||||||||||||||| |||| |||| || |||||||    
T  3972 aaaatacacaaagagacaaataatcacatacaagcacacataaacaaacataat 4025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 204162 - 204117
Alignment:
Q  32 aaataatcacatacaaacacatataaccacacataataactaatta 77  Q
    ||||||||||| ||||||| |||||| |||||||||||| ||||||    
T  204162 aaataatcacacacaaacatatataaacacacataataaataatta 204117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University