View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_low_83 (Length: 293)

Name: NF18068_low_83
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_low_83
NF18068_low_83
[»] chr8 (2 HSPs)
chr8 (12-273)||(42991240-42991501)
chr8 (29-222)||(35017979-35018172)
[»] chr3 (2 HSPs)
chr3 (1-222)||(38213993-38214214)
chr3 (1-222)||(38218212-38218433)
[»] chr4 (6 HSPs)
chr4 (85-153)||(53495383-53495451)
chr4 (67-153)||(53488672-53488758)
chr4 (59-161)||(53492989-53493091)
chr4 (59-156)||(53499286-53499383)
chr4 (86-156)||(53502408-53502478)
chr4 (53-165)||(52591022-52591134)
[»] chr6 (2 HSPs)
chr6 (56-147)||(10411374-10411465)
chr6 (56-117)||(10379765-10379826)
[»] chr7 (4 HSPs)
chr7 (45-166)||(37188910-37189031)
chr7 (53-117)||(32715057-32715121)
chr7 (53-117)||(32709835-32709899)
chr7 (53-117)||(32718435-32718499)
[»] chr2 (2 HSPs)
chr2 (53-161)||(16942648-16942756)
chr2 (53-161)||(17013313-17013421)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 42991501 - 42991240
Alignment:
Q  12 aggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42991501 aggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcttcagc 42991402  T
Q  112 gttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggatgttgtcaacc 211  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  42991401 gttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaagatccttattgggatgttgtcaacc 42991302  T
Q  212 aagaatctgcatttatatatcaacatgttagtttagttatatgataagtgtttgtgttataa 273  Q
    ||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  42991301 aagaatctgcagttatatatcaacatgttaatttggttataagataagtgtttgtgttataa 42991240  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  29 ttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaat 128  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  129 atattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggatgttgtcaaccaagaatctgca 222  Q
    | ||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||| | ||||||||| ||||| |||||||||||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

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Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38213993 - 38214214
Alignment:
Q  1 ggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcc 100  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38213993 ggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcc 38214092  T
Q  101 caatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattggga 200  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||     
T  38214093 caatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattgggg 38214192  T
Q  201 tgttgtcaaccaagaatctgca 222  Q
    ||||||||||||| ||||||||    
T  38214193 tgttgtcaaccaaaaatctgca 38214214  T

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Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38218212 - 38218433
Alignment:
Q  1 ggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcc 100  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38218212 ggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcc 38218311  T
Q  101 caatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattggga 200  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||     
T  38218312 caatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattgggg 38218411  T
Q  201 tgttgtcaaccaagaatctgca 222  Q
    ||||||||||||| ||||||||    
T  38218412 tgttgtcaaccaaaaatctgca 38218433  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 53495451 - 53495383
Alignment:
Q  85 accacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 153  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttgg 53495383  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  67 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 153  Q
    |||||| |||||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 53493091 - 53492989
Alignment:
Q  59 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaag 158  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| |    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  159 gaa 161  Q
    |||    
T  53492991 gaa 53492989  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 53499383 - 53499286
Alignment:
Q  59 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 156  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaa 53499286  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  86 ccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 156  Q
    ||||||||||| ||||| | ||| || ||||| | ||||||||||||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 52591134 - 52591022
Alignment:
Q  53 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 152  Q
    ||||| |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| || | ||| |||||||||||||| ||||||| |||| | || |    
T  52591134 aatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttag 52591035  T
Q  153 ggaaaggaatacc 165  Q
    | |||||||||||    
T  52591034 gaaaaggaatacc 52591022  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 10411465 - 10411374
Alignment:
Q  56 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggtt 147  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| ||||| |  ||   ||||||| |||||||||||||    
T  10411465 ggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattccataagctattatatattttcattggttggtt 10411374  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 10379765 - 10379826
Alignment:
Q  56 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 117  Q
    ||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||| |||||    
T  10379765 ggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 37189031 - 37188910
Alignment:
Q  45 aagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttg 144  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  145 gttctttgggaaaggaatacca 166  Q
    | | || ||||| |||| ||||    
T  37188931 gcttttggggaatggaacacca 37188910  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 32715121 - 32715057
Alignment:
Q  53 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 117  Q
    ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| || |||||    
T  32715121 aatggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 32709899 - 32709835
Alignment:
Q  53 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 117  Q
    |||||||||||||||||||| |||||| | || ||||||||||| ||||||||||| || |||||    
T  32709899 aatggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 32718499 - 32718435
Alignment:
Q  53 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 117  Q
    ||||||||||| ||||||||||||||  | || ||||| ||||| ||||||||||| || |||||    
T  32718499 aatggtgcttttgaccaatcagttttttctaatccaccccttgtggcccaatcatctgcattcca 32718435  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 16942756 - 16942648
Alignment:
Q  53 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 152  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  16942756 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 16942657  T
Q  153 ggaaaggaa 161  Q
    | |||||||    
T  16942656 gaaaaggaa 16942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 17013421 - 17013313
Alignment:
Q  53 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 152  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  17013421 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 17013322  T
Q  153 ggaaaggaa 161  Q
    | |||||||    
T  17013321 gaaaaggaa 17013313  T

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