View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_84 (Length: 292)
Name: NF18068_low_84
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_84 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 4311506 - 4311221
Alignment:
| Q |
7 |
tccaagaaaattacctaccataaataacaggtatagatggtacttgagggtagtcttgaagagaatttctagaaagaaatgaagagtaaacatagttgtt |
106 |
Q |
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| T |
4311506 |
tccaaaaaagttacctaccataaataacaggtatagatggtacttgagggtagtcttgaagagaatttctagaaagaaatgaagagtaagcatagttgtt |
4311407 |
T |
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| Q |
107 |
attgtggttttgtgaagtactagcaattcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttccca |
206 |
Q |
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| T |
4311406 |
attgtggttttgtgaagtactagcaattcctttggtggaaaagtccatgatgtctttagctttatcagctggaacatcatcaaacacaattactttccca |
4311307 |
T |
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| Q |
207 |
tcataaaagattgtcatttgtgcacaactaggctcctccttcttaatattagccttcattacactgtaataattaaacaacattaa |
292 |
Q |
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| T |
4311306 |
tcataaaagattgtcatttgtgcacaactaggctcctccttcttaatattagccttcattacactgtaataattaaacaacattaa |
4311221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 4306134 - 4305878
Alignment:
| Q |
22 |
taccataaataacaggtatagatggtacttgagggtagtcttgaagagaatttctagaaagaaatgaagagtaaacatagttgttattgtggttttgtga |
121 |
Q |
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| T |
4306134 |
taccataaatagcaggtatagatggtacttgataacagtcttgaagagaatttctagcaagaaatgaagagtaagcatagttgttattgtggtgttgtga |
4306035 |
T |
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| Q |
122 |
agtactagcaattcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaagattgtc |
221 |
Q |
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| T |
4306034 |
agtactagtaattcctttagtggaaaagtccatgatgtctttggctttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtc |
4305935 |
T |
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| Q |
222 |
atttgtgcacaactaggctcctccttcttaatattagccttcattacactgtaataa |
278 |
Q |
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| T |
4305934 |
atttgtgcacatttaggctcttccttcttaatattagccttcattacactgtaataa |
4305878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 4300962 - 4300817
Alignment:
| Q |
133 |
ttcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaagattgtcatttgtgcaca |
232 |
Q |
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| T |
4300962 |
ttccttcggaggaaaagaccatgatgtcctcgactttttcagctggaatatcatcaaacacaattattttcccatcataaaaaattgtcatttgggtaca |
4300863 |
T |
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| Q |
233 |
actaggctcctccttcttaatattagccttcattacactgtaataa |
278 |
Q |
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| T |
4300862 |
tttaggctcttccttgataatattagccttcattacactgtaataa |
4300817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 4294425 - 4294311
Alignment:
| Q |
133 |
ttcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaagattgtcatttgtgcaca |
232 |
Q |
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| T |
4294425 |
ttcctttggtgcaaaagaccatgatgcccttgactttttcagctggaatatcatcaaacacaattactttcccatcataaaaaattgtcatttgtgcaca |
4294326 |
T |
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| Q |
233 |
actaggctcctcctt |
247 |
Q |
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| T |
4294325 |
tctaggctcttcctt |
4294311 |
T |
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