View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_86 (Length: 286)
Name: NF18068_low_86
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 30173965 - 30173713
Alignment:
| Q |
19 |
atatcatatattagatgtaagagttaattatacaagtacaattaacttttatatccaataatatcttgtaaaagaacaagtgaatcatgtaaatatttat |
118 |
Q |
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| T |
30173965 |
atatcatagattagatgtaagagt--attatacaagtacagttaacttttatatccaataatatcttgtaaaagaacaagtgaatcatgtaaatatgtat |
30173868 |
T |
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| Q |
119 |
atacctgatggaatctcggatgaacttttccatttagatttgcaaattgcggaattgaagccaagattcactaatcgatcgcatatttctgtaagcaaac |
218 |
Q |
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| T |
30173867 |
atacctgatggaatctcggatgaactcttccatttagatttgcaaattgcggaattgaagccaagattcactaatcgatcgcatatttctgtaagcaaac |
30173768 |
T |
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| Q |
219 |
atttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatgtt |
273 |
Q |
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| T |
30173767 |
atttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatgtt |
30173713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 12360133 - 12359999
Alignment:
| Q |
85 |
tgtaaaagaacaagtgaatcatgtaaatatttatatacctgatggaatctcggatgaacttttc-catttagatttgcaaattgcggaattgaagccaag |
183 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| | |
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| T |
12360133 |
tgtaaaagaacaagtgaatcatgtaaatatgtatatacctgatggaatctcggatgaactaccctaatttagatttgcaaattccggaaatgaagcc-ac |
12360035 |
T |
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| Q |
184 |
attcactaatcgatcgcatatttctgtaagcaaaca |
219 |
Q |
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| T |
12360034 |
attcaacaattgatcacatatttctctgagcaaaca |
12359999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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