View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_87 (Length: 283)
Name: NF18068_low_87
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 40378198 - 40377935
Alignment:
| Q |
1 |
gaggaaagatgtgagcaggtttgttcaaatctcctattagatttcattttaccattgttagtgtactctgatttcatatagagatatttttgattgttca |
100 |
Q |
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| T |
40378198 |
gaggaaagatgtgagcaggtttgttcaaatctcctattagatttcattttaccattgttagtgtattctgatttcatatagagatatttttgattgttca |
40378099 |
T |
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| Q |
101 |
ttgatgtttctgacttgtttcttgttgtgactattcatctacagattaggtcggcagtcgaaaatagcacttcagattatgacaaggaaaaattacagga |
200 |
Q |
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| T |
40378098 |
ttgatgtttctgacttgtttcttgttgtgacaattcatctacagattaggtcggcagtcgaaaatagcacttcagattatgacaaggaaaaattacagga |
40377999 |
T |
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| Q |
201 |
aagattggccaagctttctggaggagttgcggtgcttaaggtatgcttatttatgttgaccttg |
264 |
Q |
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| T |
40377998 |
aagattggccaagctttctggaggagttgcggtgcttaaggtatgcttatttatgttgaccttg |
40377935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 40366217 - 40366115
Alignment:
| Q |
140 |
tacagattaggtcggcagtcgaaaatagcacttcagattatgacaaggaaaaattacaggaaagattggccaagctttctggaggagttgcggtgcttaa |
239 |
Q |
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| T |
40366217 |
tacagatcaggtctgcagttgaaaatagcacttcagattatgacagggataaattacaggaaagattggccaagctttctggtggtgttgccgtgcttaa |
40366118 |
T |
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| Q |
240 |
ggt |
242 |
Q |
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| T |
40366117 |
ggt |
40366115 |
T |
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