View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_90 (Length: 277)
Name: NF18068_low_90
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 272
Target Start/End: Complemental strand, 16330518 - 16330271
Alignment:
| Q |
29 |
aaaaaagtagagcttaccttctccctccaatagaaaatgttcccgtacttgcctgccaggcgactccagaaactacgtgggatgtccaaatcaacggtag |
128 |
Q |
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| T |
16330518 |
aaaaaagtagagcttaccttctccctccattagaaaatgctcccgtacttgcctgccaggcgactccagaaattacgtggggtgtccaaatcaacggtag |
16330419 |
T |
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| Q |
129 |
caccaacattgaaattcaatatattccctggtcaac-------nnnnnnnnctccttaatatttacctacatcggtagatccttcaagaagaaagaagtg |
221 |
Q |
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| T |
16330418 |
caccaacattgaaattcaatatattccctggtcaacagaaagaaaaaaaaactccttaata-ttacctatat---tagatccatcaagaagaaagaagtg |
16330323 |
T |
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| Q |
222 |
gaaataacagagaggaagaacaacagtaacagaaaggtgt-gtagtttgtgc |
272 |
Q |
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| T |
16330322 |
gaaataaccgagaggacgaacaatactaactgaaaggtgtggtagtttgtgc |
16330271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 27961780 - 27962026
Alignment:
| Q |
29 |
aaaaaagtagagcttaccttctccctccaatagaaaatgttcccgtacttgcctgccaggcgactccagaaactacgtgggatgtccaaatcaacggtag |
128 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
27961780 |
aaaaaaatagagcttaccttctcccgccaatagaaaatgttcccgtacttgcctgccaagcgactccagaaactacgtgggatgtccaaatcaacagtag |
27961879 |
T |
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| Q |
129 |
caccaacattgaaattcaatatattccctggtcaacnnnnnnnnctccttaatatttacctacatcggtagatccttcaagaag-----aaagaagtgga |
223 |
Q |
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| T |
27961880 |
caccaacattgaaattcaatatattgcctggtcaac-aaaaaaactccttaat-gttacatatattggtaggtccatcaagaagaaagaaaagaagccaa |
27961977 |
T |
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| Q |
224 |
aataacagagaggaagaacaacagtaacagaaaggtgt-gtagtttgtg |
271 |
Q |
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| T |
27961978 |
aataacaaagaggaagaacaacaggaacagaaaggtgtggtagtttgtg |
27962026 |
T |
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