View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_92 (Length: 274)
Name: NF18068_low_92
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 43565137 - 43565012
Alignment:
| Q |
129 |
atggctccaccaaattccacaacccttgatctcatcaaaaccgagtcattatttgatttatctgagggaaagtttaaggtgagaggtgttcctttgttcc |
228 |
Q |
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| T |
43565137 |
atggctccaccgaattccacaaaccttgatctcatcaaaactgagtctttatttgatttatctgagggaaagtttaaggttagagatgtttctttgttcc |
43565038 |
T |
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| Q |
229 |
atgatgttcctgagaatgtttctttc |
254 |
Q |
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| T |
43565037 |
atgatgttcctgagaatgtttctttc |
43565012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 44954827 - 44954872
Alignment:
| Q |
17 |
tactatatat-ccccatcatagagtaaggtttttcacttcccttca |
61 |
Q |
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| T |
44954827 |
tactatatataccccatcatagagtaaggattttcacttcccttca |
44954872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 43973477 - 43973589
Alignment:
| Q |
141 |
aattccacaacccttgatctcatcaaaaccgagtcattatttgatttatctgagggaaagtttaaggtgagaggtgttcctttgttccatgatgttcctg |
240 |
Q |
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| T |
43973477 |
aattccacagcccttgatcttgtcaaaactgagtctttatttgatttatccgagggaacatttactgtgaaaggcgttcctttgttccatgatgttccta |
43973576 |
T |
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| Q |
241 |
agaatgtttcttt |
253 |
Q |
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| T |
43973577 |
acaatgtttcttt |
43973589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 36433075 - 36432964
Alignment:
| Q |
146 |
cacaacccttgatctcatcaaaaccgagtcattatttgatttatctgagggaaagtttaaggtgagaggtgttcctttgttccatgatgttcctgagaat |
245 |
Q |
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||||||||||||| | ||||||| |||||||| |||||||||| |||||||| || | || || |||||||||||||| |||||||||||||||||| |
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| T |
36433075 |
cacaacccttgatattgtcaaaactgagtcattgcttgatttatccgagggaaaattcactgttaggggtgttcctttgtttcatgatgttcctgagaat |
36432976 |
T |
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| Q |
246 |
gtttctttcagt |
257 |
Q |
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| T |
36432975 |
gtttctttcagt |
36432964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 8952102 - 8952134
Alignment:
| Q |
207 |
gtgagaggtgttcctttgttccatgatgttcct |
239 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
8952102 |
gtgaaaggtgttcctttgttccatgatgttcct |
8952134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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