View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_93 (Length: 270)
Name: NF18068_low_93
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 21228449 - 21228577
Alignment:
| Q |
17 |
catcaattcattgtcacaatcaagtttgtatttcaagttcaaaaaattccttgacatccctttcgattcaaatgggaatgggctgcgatgtcaccaacat |
116 |
Q |
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| T |
21228449 |
catcaattgattgtcacagtcaagtttgtatttcaagctcaaaaagttccttgacatcccttttgattcaaatgggaatgagctgcgatgtcaccaacat |
21228548 |
T |
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| Q |
117 |
tcttacagaaaatattttgcaggttctct |
145 |
Q |
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| T |
21228549 |
tcttacagaaaatattttgcaggttctct |
21228577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 7884274 - 7884181
Alignment:
| Q |
150 |
gacgaggacgagtggcagagggtaatatcaaatatagaacctggaaacaaaattaaggtggttgttggttttacaaatgaattcattgtgaaga |
243 |
Q |
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| T |
7884274 |
gacgaggaggagtggcagagagtaatatcaaatatagaacctggaaacgaaattaaggtggttgttgtttttacaaatgaattcattgtgaaga |
7884181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 7885020 - 7884907
Alignment:
| Q |
36 |
tcaagtttgtatttcaagttcaaaaaattccttgacatccctttcgattcaaatgggaatgggctgcgatgtcaccaacattcttacagaaaatattttg |
135 |
Q |
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| T |
7885020 |
tcaagtttgtatttccagctcaaaaaattcagtaacttcccttttgattgaaatgggagtgagctgcgatgtcgcaaacattcttagagaaaatattttg |
7884921 |
T |
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| Q |
136 |
caggttctctcttt |
149 |
Q |
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| T |
7884920 |
caggttatctcttt |
7884907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 10035449 - 10035503
Alignment:
| Q |
98 |
gctgcgatgtcaccaaca---ttcttacagaaaatattttgcaggttctctcttt |
149 |
Q |
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| T |
10035449 |
gctgcgatgtcaccaacaaccttcttacagaaaatattttgcaggttctctcttt |
10035503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 34724176 - 34724075
Alignment:
| Q |
48 |
ttcaagttcaaaaaattccttgacatccctttcgattcaaatgggaatgggctgcgatgtcaccaacattcttacagaaaatattttgcaggttctctct |
147 |
Q |
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|||||| ||| |||||||||||||||| |||| |||||||| |||||| |||| |||||| || | ||||| |||||| ||||| |||||||| ||| |
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| T |
34724176 |
ttcaagctcacaaaattccttgacatcactttttattcaaattggaatgaactgccgtgtcactaatactcttaaagaaaacattttccaggttctttct |
34724077 |
T |
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| Q |
148 |
tt |
149 |
Q |
| |
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|| |
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| T |
34724076 |
tt |
34724075 |
T |
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