View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_low_94 (Length: 266)
Name: NF18068_low_94
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 35680719 - 35680968
Alignment:
| Q |
1 |
aggaacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680719 |
aggaacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattca |
35680818 |
T |
|
| Q |
101 |
gtgagaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680819 |
gtgagaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagtttta |
35680918 |
T |
|
| Q |
201 |
aggatgtctacttggtttatgaactcatggaaacagatcttcatcaaatt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680919 |
aggatgtctacttggtttatgaactcatggaaacagatcttcatcaaatt |
35680968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 35685988 - 35686224
Alignment:
| Q |
9 |
atggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtgagaac |
108 |
Q |
| |
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||||| ||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||| ||| ||| |
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| T |
35685988 |
atggtttggtgtgttcatctatcaataaggatactaatgagaaagttgcaattaagaagattagcaacatctttgataattgtgttgattcaatgaaaac |
35686087 |
T |
|
| Q |
109 |
tttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagttttaaggatgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35686088 |
tttaagggagatgatgctgcttagaaatattcgacatgaaaatgtgatcgttttgaaagat-ttatgatgccggtacatagaacaagttttaaggatgtc |
35686186 |
T |
|
| Q |
209 |
tacttggtttatgaactcatggaaacagatcttcatca |
246 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
35686187 |
tacttggtttatgaactcatggatacagatcttcatca |
35686224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 23685411 - 23685171
Alignment:
| Q |
4 |
aacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtg |
103 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |||||||| ||||| ||| || || |
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| T |
23685411 |
aacatatggcatggtgtgctcatccatcaatatggataccaatgagaaagtggcaatcaagaagattagcaatgtatttgatgattgtggtgacgcactg |
23685312 |
T |
|
| Q |
104 |
agaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagttttaagg |
203 |
Q |
| |
|
||||||||||||||||||| | |||||||| || ||| || ||||||||||||||| |||||||||||||||| |||| || |||||||||||||||| |
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| T |
23685311 |
agaactttaagggagatgaagttgcttagacat-gtcggcatgagaatgtgattgctctgaaagatgttatgataccggaccaaagaacaagttttaagg |
23685213 |
T |
|
| Q |
204 |
atgtctacttggtttatgaactcatggaaacagatcttcatc |
245 |
Q |
| |
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|| |||||||||| |||||| ||||||| | ||||||||||| |
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|
| T |
23685212 |
atatctacttggtctatgaattcatggataaagatcttcatc |
23685171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 24057648 - 24057408
Alignment:
| Q |
4 |
aacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtg |
103 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |||||||| ||||| ||| || || |
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| T |
24057648 |
aacatatggcatggtgtgctcatccatcaatatggataccaatgagaaagtggcaatcaagaagattagcaatgtatttgatgattgtggtgacgcactg |
24057549 |
T |
|
| Q |
104 |
agaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagttttaagg |
203 |
Q |
| |
|
||||||||||||||||||| | |||||||| || ||| || ||||||||||||||| |||||||||||||||| |||| || |||||||||||||||| |
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| T |
24057548 |
agaactttaagggagatgaagttgcttagacat-gtcggcatgagaatgtgattgctctgaaagatgttatgataccggaccaaagaacaagttttaagg |
24057450 |
T |
|
| Q |
204 |
atgtctacttggtttatgaactcatggaaacagatcttcatc |
245 |
Q |
| |
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|| |||||||||| |||||| ||||||| | ||||||||||| |
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| T |
24057449 |
atatctacttggtctatgaattcatggataaagatcttcatc |
24057408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 23669732 - 23669488
Alignment:
| Q |
1 |
aggaacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||| | |||||||| ||||| |||||||||||||| |||||||| ||||| |||| || |
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| T |
23669732 |
aggaacatatggcgtggtgtgctcatccatcaatatggataccaacgagaaagtggcaatcaagaagattagcaacgtatttgatgattgtggtgatgca |
23669633 |
T |
|
| Q |
101 |
gtgagaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagtttta |
200 |
Q |
| |
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| ||||||||||||||||||| | ||||| || || |||| || |||||||||||| || |||||||||||||||| || | || ||||||||||||| |
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| T |
23669632 |
ctcagaactttaagggagatgaagttgcttcgacatgttcggcatgagaatgtgatttctctgaaagatgttatgataccagaccaaagaacaagtttta |
23669533 |
T |
|
| Q |
201 |
aggatgtctacttggtttatgaactcatggaaacagatcttcatc |
245 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||| ||||||| |
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|
| T |
23669532 |
aggatgtctacttggtctatgaactcatggataaagaccttcatc |
23669488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24042008 - 24041764
Alignment:
| Q |
1 |
aggaacatatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||| | |||||||| ||||| |||||||||||||| |||||||| ||||| |||| || |
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| T |
24042008 |
aggaacatatggcgtggtgtgctcatccatcaatatggataccaacgagaaagtggcaatcaagaagattagcaacgtatttgatgattgtggtgatgca |
24041909 |
T |
|
| Q |
101 |
gtgagaactttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaagtttta |
200 |
Q |
| |
|
| ||||||||||||||||||| | ||||| || || |||| || |||||||||||| || |||||||||||||||| || | || ||||||||||||| |
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|
| T |
24041908 |
ctcagaactttaagggagatgaagttgcttcgacatgttcggcatgagaatgtgatttctctgaaagatgttatgataccagaccaaagaacaagtttta |
24041809 |
T |
|
| Q |
201 |
aggatgtctacttggtttatgaactcatggaaacagatcttcatc |
245 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||| ||||||| |
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|
| T |
24041808 |
aggatgtctacttggtctatgaactcatggataaagaccttcatc |
24041764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 23674456 - 23674230
Alignment:
| Q |
8 |
tatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtgagaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| ||| || || |||||||||| ||||| ||||||||||||||| |||||||||||| |||||| || | |||| |
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|
| T |
23674456 |
tatgttgtggtgtgctcagccatcagtaaggagaccaatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaa |
23674357 |
T |
|
| Q |
108 |
ctttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaa---gttttaagga |
204 |
Q |
| |
|
||||| ||||||||| ||| |||||| || |||| |||||||||||||| ||||||||||||||||||| | | || | ||||| |||||||||| |
|
|
| T |
23674356 |
ctttatgggagatgaagcttcttagacatgttcggcacgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaagga |
23674257 |
T |
|
| Q |
205 |
tgtctacttggtttatgaactcatgga |
231 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
23674256 |
tgtctacttggtctatgaactaatgga |
23674230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 24046732 - 24046506
Alignment:
| Q |
8 |
tatggtgtggtgtgctcatccatcaataaagatactgatgagaaagttgcaattaagaagattagcaatatatttgataattgtattgattcagtgagaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| ||| || || |||||||||| ||||| ||||||||||||||| |||||||||||| |||||| || | |||| |
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|
| T |
24046732 |
tatgttgtggtgtgctcagccatcagtaaggagaccaatgagaaagtcgcaatgaagaagattagcaatgtatttgataatttgattgatgcactaagaa |
24046633 |
T |
|
| Q |
108 |
ctttaagggagatgatgctgcttagaaatattcgacacgagaatgtgattgctttgaaagatgttatgatgccggtacatagaacaa---gttttaagga |
204 |
Q |
| |
|
||||| ||||||||| ||| |||||| || |||| |||||||||||||| ||||||||||||||||||| | | || | ||||| |||||||||| |
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|
| T |
24046632 |
ctttatgggagatgaagcttcttagacatgttcggcacgagaatgtgatcactttgaaagatgttatgatactagatcaaaaaacaacatgttttaagga |
24046533 |
T |
|
| Q |
205 |
tgtctacttggtttatgaactcatgga |
231 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
24046532 |
tgtctacttggtctatgaactaatgga |
24046506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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