View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_96 (Length: 264)
Name: NF18068_low_96
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 47088056 - 47087823
Alignment:
| Q |
14 |
ttctcttagatctagcagtcaatcatgtacattgaatacttgttgaattatgcaaggtagttcttagaaactaacttgattttctttctcaaaatgctta |
113 |
Q |
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| T |
47088056 |
ttctcttagatctagcagtcaatcatgtacatcgaatacttgttgaattatgcaaggtagttcttagaaactaactttattttctttctcaaaatgcata |
47087957 |
T |
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| Q |
114 |
caacgagatattttcttttgcttcaacctcattacctcaacaaggtaagaggacatcaagtctagtcttcatgtaatgccactaaatttttcaaccatgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47087956 |
caacgagatattttcttttgcttcaacctcattacctcaacaaggtaagaggacatcaagtctagtcttcatgtaatgccactaaatttttcaaccatgc |
47087857 |
T |
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| Q |
214 |
agccataactttggtcacaacgcaatcttgatgc |
247 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
47087856 |
agccataactttggtcacaatgcaatcttgatgc |
47087823 |
T |
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