View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_low_97 (Length: 260)
Name: NF18068_low_97
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_low_97 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 1695909 - 1695981
Alignment:
| Q |
70 |
gtgataaactatgattatgtcagactaatcgttgatctaaatatagctggtatactaaggttgattctttcat |
142 |
Q |
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| T |
1695909 |
gtgataaactatgattatgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcat |
1695981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 1696050 - 1696108
Alignment:
| Q |
202 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagaga |
260 |
Q |
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| T |
1696050 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagaga |
1696108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 1685404 - 1685447
Alignment:
| Q |
97 |
atcgttgatctaaatatagctggtatactaaggttgattctttc |
140 |
Q |
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| T |
1685404 |
atcgttgatctaaatatagctggtatacttaggttgattctttc |
1685447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 1685520 - 1685559
Alignment:
| Q |
221 |
tatattcacgtaaacaccaaaacaaagtaataaacagaga |
260 |
Q |
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| T |
1685520 |
tatattcacgtaaacaacaaaacaaagtaataaatagaga |
1685559 |
T |
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