View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18069_low_1 (Length: 728)

Name: NF18069_low_1
Description: NF18069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18069_low_1
NF18069_low_1
[»] chr4 (25 HSPs)
chr4 (13-712)||(2471707-2472407)
chr4 (106-406)||(2460515-2460817)
chr4 (549-701)||(2460268-2460420)
chr4 (270-405)||(2367678-2367813)
chr4 (551-690)||(2547217-2547356)
chr4 (270-387)||(12124764-12124881)
chr4 (284-405)||(2373256-2373376)
chr4 (284-384)||(2621177-2621277)
chr4 (261-400)||(2547459-2547598)
chr4 (281-385)||(2491070-2491174)
chr4 (626-686)||(2533990-2534050)
chr4 (260-334)||(2381369-2381443)
chr4 (552-686)||(2518910-2519044)
chr4 (281-362)||(2486272-2486353)
chr4 (270-387)||(12126820-12126937)
chr4 (628-684)||(5035301-5035357)
chr4 (596-691)||(2475952-2476047)
chr4 (547-686)||(2621395-2621534)
chr4 (632-686)||(5106631-5106685)
chr4 (633-690)||(2546817-2546874)
chr4 (633-685)||(2367981-2368033)
chr4 (627-686)||(2467219-2467278)
chr4 (262-385)||(2525699-2525822)
chr4 (281-403)||(5102100-5102222)
chr4 (628-686)||(2490805-2490863)
[»] chr1 (2 HSPs)
chr1 (260-400)||(15837955-15838095)
chr1 (281-330)||(33161430-33161479)
[»] chr8 (1 HSPs)
chr8 (205-331)||(39516853-39516979)
[»] chr5 (2 HSPs)
chr5 (281-390)||(39252916-39253025)
chr5 (275-336)||(32268761-32268822)
[»] chr7 (1 HSPs)
chr7 (287-385)||(2576415-2576513)


Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 13 - 712
Target Start/End: Complemental strand, 2472407 - 2471707
Alignment:
Q  13 aaaataataattaagcagattgagaagacctctaaaaaata-aatttgattgagaagagtttagttttgacctataaataatagcagccttcgggggaat 111  Q
    ||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472407 aaaataataataaagcagattgagaagacctctaaaaaaaataaattgattgagaagagtttagttttgacctataaataatagcagccttcgggggaat 2472308  T
Q  112 gaatgaatgaattaagagaatttcaacaatggttgcgacagnnnnnnnccgtaagaaacgaagaagaaaaatgaaggccgcgtcaggttcaagtttacca 211  Q
    |||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2472307 gaatgaatgagttaagagaatttcaacaatggttgcgacagaaaaaaaccgtaagaaacgaagaagaaaaatgaaggccgcatcaggttcaagtttacca 2472208  T
Q  212 gaggaaatatgggagagcatcttcaaattcctcgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccatcaccaatc 311  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472207 gaggaaatatgggagagcatcttcaaattccttgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccatcaccaatc 2472108  T
Q  312 gtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttccctaacctcacctctctcgacatctctctctt 411  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472107 gtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttccctaacctcacctctctcgacatctctctctt 2472008  T
Q  412 ttccgaaagaattgacctcgatgcccttcttgttgaaatctccactttccctaatttatcagacatcaaatcgctccgtctttccactttccctaattca 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472007 ttccgaaagaattgacctcgatgcccttcttgttgaaatctccactttccctaatttatcagacatcaaatcgctccgtctttccactttccctaattca 2471908  T
Q  512 tacatcaaatcgccccatctctcctaccgtgccttcaatattcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaatt 611  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471907 tacatcaaatcgctccatctctcctaccgtgcctccaatattcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaatt 2471808  T
Q  612 gttccaaagttaattatatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccctcacagaatctggcctccatta 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471807 gttccaaagttaattatatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccctcacagaatctggcctccatta 2471708  T
Q  712 t 712  Q
    |    
T  2471707 t 2471707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 106 - 406
Target Start/End: Complemental strand, 2460817 - 2460515
Alignment:
Q  106 gggaatgaatgaatgaattaagagaatttcaacaatggttgcgacagnnnnnnnccgtaagaaacgaagaagaaaaatgaaggccgcgtcaggttcaagt 205  Q
    ||||| |||||||||| ||||||||| |||||||||||| ||  |||       || ||||||||||| || ||||||||||||||| ||| |||||  |    
T  2460817 gggaaggaatgaatgagttaagagaacttcaacaatggtggcagcaggaaaaaacc-taagaaacgaacaacaaaaatgaaggccgcatcatgttcacat 2460719  T
Q  206 ttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccatca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||  |||||||||    
T  2460718 ttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaaccaccacactttcaaatctctctccatggtctccaaacagttcctctccatca 2460619  T
Q  306 ccaatcgtctccgattctccctcacaatcta---ctgtgaaacaatccctttccttcatcacctcttcgaaaggttccctaacctcacctctctcgacat 402  Q
    ||||||||||||||||||| |||| |||| |   |  |  | |||| |||||||||| || | ||||  ||||||| |||||||| ||||||||||||||    
T  2460618 ccaatcgtctccgattctctctcaaaatcaaaaccgatagagcaattcctttccttcgtctcatctttcaaaggtttcctaacctaacctctctcgacat 2460519  T
Q  403 ctct 406  Q
    ||||    
T  2460518 ctct 2460515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 549 - 701
Target Start/End: Complemental strand, 2460420 - 2460268
Alignment:
Q  549 atattcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaattgttccaaagttaattatatcgacaagaatcatctctt 648  Q
    ||||| |||||||||||||||||| ||||||  |||||||||| |||||||||| ||| |||||| | || ||||| ||||| |||||||||||||||||    
T  2460420 atatttctgaagatggattgcgagttctgtccaaaaagatgaaaaaattgacatttctcaattgtacaaatgttaaatatatggacaagaatcatctctt 2460321  T
Q  649 cttgatagctgattgttttcctttactcgaagaactcaccctcacagaatctg 701  Q
    ||| || |||||||||||||| |||||||||||||||| ||||||||||||||    
T  2460320 cttaattgctgattgttttccattactcgaagaactcatcctcacagaatctg 2460268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 270 - 405
Target Start/End: Original strand, 2367678 - 2367813
Alignment:
Q  270 ctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctctt 369  Q
    |||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||| |  |||| | |  | ||||||||||||||||| ||| ||| ||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccgataaaacaatccctttcctttatcgcctttt 2367777  T
Q  370 cgaaaggttccctaacctcacctctctcgacatctc 405  Q
    | |||||||||| |||||||| || |||||| ||||    
T  2367778 ccaaaggttccccaacctcacatccctcgacttctc 2367813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 551 - 690
Target Start/End: Complemental strand, 2547356 - 2547217
Alignment:
Q  551 attcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaattgttccaaagttaattatatcgacaagaatcatctcttct 650  Q
    ||||||| | |||| ||||||||| |||||||||||||||| || ||||| ||||| | |||||||||| | |  | ||||  ||||||| || | ||||    
T  2547356 attcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattct 2547257  T
Q  651 tgatagctgattgttttcctttactcgaagaactcaccct 690  Q
    | || ||||||||||| |||||||| ||||||||||||||    
T  2547256 tcattgctgattgtttccctttacttgaagaactcaccct 2547217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 12124881 - 12124764
Alignment:
Q  270 ctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactg-tgaaacaatccctttccttcatcacctct 368  Q
    |||| ||||| ||||||||||| ||| ||||||||||||| ||||||| ||| ||| || |||||| ||| ||||||||||||||||||| | | |||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatct-ctgatgaaacaatccctttccttgaccgcctct 12124783  T
Q  369 tcgaaaggttccctaacct 387  Q
    || |||||||||| |||||    
T  12124782 tccaaaggttccccaacct 12124764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 2373256 - 2373376
Alignment:
Q  284 tccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcccta 383  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| |  |||| | |  | ||||||| ||||||||| ||| ||||||| |||||||||| |    
T  2373256 tccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgt-cgataaaacaattcctttccttaatcgcctcttccaaaggttcccca 2373354  T
Q  384 acctcacctctctcgacatctc 405  Q
    |||||||||| |||||| ||||    
T  2373355 acctcacctccctcgacctctc 2373376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 2621177 - 2621277
Alignment:
Q  284 tccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcccta 383  Q
    |||||||||||||| ||||||||||| ||||| || |||||| ||||||||| |  | |||| ||||||||| ||| || ||||||||| ||||||||||    
T  2621177 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 2621276  T
Q  384 a 384  Q
    |    
T  2621277 a 2621277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 400
Target Start/End: Complemental strand, 2547598 - 2547459
Alignment:
Q  261 ctttcaaatctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttca 360  Q
    |||| ||||| || ||||| ||||||||||||||| | ||||||||||| |||||||| |||||  ||||||||| | || | |  |||| || |||||     
T  2547598 ctttaaaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcatatcatcctttcccttcc 2547499  T
Q  361 tcacctcttcgaaaggttccctaacctcacctctctcgac 400  Q
    |||| ||||| |||||||||||||| |||| || ||||||    
T  2547498 tcacttcttccaaaggttccctaacatcacatcactcgac 2547459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 281 - 385
Target Start/End: Complemental strand, 2491174 - 2491070
Alignment:
Q  281 gtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcc 380  Q
    ||||| ||||||||| | |||||||| || ||||||||||| ||  ||||||||| |  || |||||||||||||||| |||  ||||| ||||||||||    
T  2491174 gtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttcc 2491075  T
Q  381 ctaac 385  Q
    |||||    
T  2491074 ctaac 2491070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 2534050 - 2533990
Alignment:
Q  626 tatatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactca 686  Q
    |||||| |||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||    
T  2534050 tatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactca 2533990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 2381369 - 2381443
Alignment:
Q  260 actttcaaatctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatc 334  Q
    |||||||| ||||||||||| ||||||||||||||  |||| ||||||||  |||||||||||||| ||| ||||    
T  2381369 actttcaagtctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgattctccgtcaaaatc 2381443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 686
Target Start/End: Complemental strand, 2519044 - 2518910
Alignment:
Q  552 ttcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaattgttccaaagttaattatatcgacaagaatcatctcttctt 651  Q
    ||||| |||| || |||| |||| ||||| |||| ||||| || ||||||| ||| | |||||   || | || |||||| |||||||| ||||||||||    
T  2519044 ttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttattaaatgaaatatatccacaagaatgatctcttctt 2518945  T
Q  652 gatagctgattgttttcctttactcgaagaactca 686  Q
     || ||||||||||| ||||||||| |||||||||    
T  2518944 cattgctgattgtttccctttactcaaagaactca 2518910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 2486353 - 2486272
Alignment:
Q  281 gtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatc 362  Q
    ||||| ||||||||| | ||||||||||| ||||||||||||||  ||||||||| |    |||||||||||||||||||||    
T  2486353 gtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatc 2486272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 12126937 - 12126820
Alignment:
Q  270 ctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctctt 369  Q
    |||| ||||| ||||||||||| ||| ||||||||||||| ||||||| ||||||| || || |||    ||||| ||||||||||||| | | ||| ||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctttccttgaccgcctatt 12126838  T
Q  370 cgaaaggttccctaacct 387  Q
    | |||||||||| |||||    
T  12126837 caaaaggttccccaacct 12126820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 684
Target Start/End: Complemental strand, 5035357 - 5035301
Alignment:
Q  628 tatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaact 684  Q
    |||| |||||||| |||| |||||||| ||||||||||| |||||||||||||||||    
T  5035357 tatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaact 5035301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 596 - 691
Target Start/End: Complemental strand, 2476047 - 2475952
Alignment:
Q  596 ttgacatctctaaattgttccaaagttaattatatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccctc 691  Q
    ||||||||||| | ||||| ||||   ||||||||| ||||| || ||||||||||  ||||| |||| |||||||||||||||||| ||| ||||    
T  2476047 ttgacatctctcacttgttacaaaaagaattatatccacaaggatgatctcttctttctagctaattgctttcctttactcgaagaaatcaacctc 2475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 547 - 686
Target Start/End: Original strand, 2621395 - 2621534
Alignment:
Q  547 caatattcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaattgttccaaagttaattatatcgacaagaatcatctc 646  Q
    ||||||||||  |||||| ||||||||| | ||  |||| ||||| || ||||||||||| | ||||| |  | ||||| | |||  ||||||| ||||     
T  2621395 caatattcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatcta 2621494  T
Q  647 ttcttgatagctgattgttttcctttactcgaagaactca 686  Q
    |||||  | ||||||||||| |||||||||||||||||||    
T  2621495 ttcttccttgctgattgtttccctttactcgaagaactca 2621534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 686
Target Start/End: Original strand, 5106631 - 5106685
Alignment:
Q  632 gacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactca 686  Q
    ||||||| | |||||||||| || ||||||||||| |||||||||||||||||||    
T  5106631 gacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactca 5106685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 690
Target Start/End: Complemental strand, 2546874 - 2546817
Alignment:
Q  633 acaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccct 690  Q
    |||||||| || | ||||| || ||||||||||||||||||||||||||| |||||||    
T  2546874 acaagaatgatttattcttcattgctgattgttttcctttactcgaagaattcaccct 2546817  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 685
Target Start/End: Original strand, 2367981 - 2368033
Alignment:
Q  633 acaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactc 685  Q
    |||||| | |||||||||| || ||||||||||| ||||||||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 2467278 - 2467219
Alignment:
Q  627 atatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactca 686  Q
    |||||||||||||  |||| ||||| || ||||||||||| |||||||||||||| ||||    
T  2467278 atatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctca 2467219  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 385
Target Start/End: Complemental strand, 2525822 - 2525699
Alignment:
Q  262 tttcaaatctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcat 361  Q
    ||||| |||||| ||| | ||||| ||||||||| | |||||||||||  |||| |||||||   ||||||||| |  || ||| |||||||| ||| ||    
T  2525822 tttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttcttaat 2525723  T
Q  362 cacctcttcgaaaggttccctaac 385  Q
    |  ||||| |||||||||||||||    
T  2525722 cgtctctttgaaaggttccctaac 2525699  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 403
Target Start/End: Original strand, 5102100 - 5102222
Alignment:
Q  281 gtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactg-tgaaacaatccctttccttcatcacctcttcgaaaggttc 379  Q
    ||||| ||||||||||| || ||||| ||| |||| ||||||||  |||||||| |||| |  ||| ||||||||| ||| || ||| ||||||||||||    
T  5102100 gtctcgaaacagtttttgtctatcactaatagtcttcgattctcggtcacaatc-actgatcgaaccatccctttcattcctctccttttcgaaaggttc 5102198  T
Q  380 cctaacctcacctctctcgacatc 403  Q
    |||||| |||| || ||| |||||    
T  5102199 cctaacgtcacatcactcaacatc 5102222  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 686
Target Start/End: Complemental strand, 2490863 - 2490805
Alignment:
Q  628 tatcgacaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactca 686  Q
    |||| |||||||| ||||||| || || ||||||||||| ||||||||||| |||||||    
T  2490863 tatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactca 2490805  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 15837955 - 15838095
Alignment:
Q  260 actttcaaatctctttccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttc 359  Q
    |||||||| || || || |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||     | |||||||||||||| |||    
T  15837955 actttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattc 15838054  T
Q  360 atcacctcttcgaaaggttccctaacctcacctctctcgac 400  Q
     | |||||||| |||||||||||||||| || |||||||||    
T  15838055 ctaacctcttccaaaggttccctaacctaacatctctcgac 15838095  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 33161479 - 33161430
Alignment:
Q  281 gtctccaaacagtttttctccatcaccaatcgtctccgattctccctcac 330  Q
    ||||||||||||||| |||||||||| ||| |||| |||||||| |||||    
T  33161479 gtctccaaacagtttctctccatcactaatagtcttcgattctcactcac 33161430  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 39516979 - 39516853
Alignment:
Q  205 tttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccatc 304  Q
    |||||| ||||| |||||||||   |||||||||||||||||||   ||||||| |||||||| ||||| ||||| ||||||| ||| ||| || |||||    
T  39516979 tttaccggaggatatatgggagtctatcttcaaattcctcgacggtgacaaccacactttcaagtctctctccatcgtctccagacaatttctcgccatc 39516880  T
Q  305 accaatcgtctccgattctccctcaca 331  Q
    ||||| |||||| |||||||| |||||    
T  39516879 accaaccgtctcagattctccgtcaca 39516853  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 281 - 390
Target Start/End: Original strand, 39252916 - 39253025
Alignment:
Q  281 gtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcc 380  Q
    ||||||| ||||||| ||||||||| ||| |||||||||| ||||||| |||||  |  | |||||||||||| ||||| ||  ||||| ||||||||||    
T  39252916 gtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttcc 39253015  T
Q  381 ctaacctcac 390  Q
    | ||||||||    
T  39253016 ccaacctcac 39253025  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 32268822 - 32268761
Alignment:
Q  275 tccatggtctccaaacagtttttctccatcaccaatcgtctccgattctccctcacaatcta 336  Q
    ||||| ||||||||||||||  ||||||||||||| ||||| |||||||| |||||| ||||    
T  32268822 tccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctctctcacagtcta 32268761  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 2576415 - 2576513
Alignment:
Q  287 aaacagtttttctccatcaccaatcgtctccgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttccctaac 385  Q
    ||||||||||| ||||||||||||||||| ||||||||  ||||||||  |  |  ||| ||||||||| ||  || ||||||||||||| ||||||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaac 2576513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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