View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18069_low_2 (Length: 580)
Name: NF18069_low_2
Description: NF18069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18069_low_2 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 580
Target Start/End: Original strand, 12540736 - 12541298
Alignment:
| Q |
15 |
agaaacatcagtactttagttacagaacatatacaagatgtgaaagctgctaatttagttacagaacaagaggtgaaagctgctaaaggagcagttgctg |
114 |
Q |
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| T |
12540736 |
agaaacatcggtgctttagatacagaacatatacaagatgtgaaagctgctaaatttgttacagaacaagaggtgacagctgctaaaagagcagttgctg |
12540835 |
T |
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| Q |
115 |
tgctgataaaacgcagtgtcaaacctgatcttgctagttgtcaatccgtgattggtggactatacaacggtggaacagttaaagttacaagaaaggtgga |
214 |
Q |
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| T |
12540836 |
ttctgataaaacgcggtgtcaaacctgatcttgctagttgtcaatccgtggttggtggactatacaatggtggaacagttaaagttacaagaaagatgga |
12540935 |
T |
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| Q |
215 |
agagttgagtttgagattttcctattgttttctgaaaaatc---attactgaggttannnnnnnnnnnnnnnnnnnnntcatgtgtgttcttgcttgacc |
311 |
Q |
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| T |
12540936 |
agagttgagtttgagattttctgtttgttttctggaaaatcattattacttaggttaattattatgattatatttatttcatgtgtgttcttgcttgacc |
12541035 |
T |
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| Q |
312 |
ttagctttcctgataataatatgggtctagctgtaccatattgaaataaggatggatgctgatgcgatggagggacggaaggagcta---caagcctgta |
408 |
Q |
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| T |
12541036 |
ttagctttcctgataataatatgggtctagctgtaccatattgaaataaggatggatcc---ttcaaaggaaggacggaaggagctacgtcctgccggtg |
12541132 |
T |
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| Q |
409 |
gtgtatcgtagattacatgcttatgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctatatctttgcttccaagtgtgtg |
508 |
Q |
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| T |
12541133 |
gaatattgtagattac------atgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttctacatctttgcttccaagtgtgtg |
12541226 |
T |
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| Q |
509 |
cactgcaaaataataatgttcaattaatgtaattctaatttgttcatgtgtttcttgttttatattttctct |
580 |
Q |
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| T |
12541227 |
cactgcaaaataataatgcttaattaatgtaattctaatttgttcatgtgtttcttgttttatattttctct |
12541298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 12535355 - 12535197
Alignment:
| Q |
69 |
ttagttacagaacaagaggtgaaagctgctaaaggagcagttgctgtgctgataaaacgcagtgtcaaacctgatcttgctagttgtcaatccgtgattg |
168 |
Q |
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| T |
12535355 |
ttaggtacagaacatgaggtcaaagctgctaaacgagccttgtgtgtgctgataaaacgtggtgtccaacctcatctcgctagctatcaatctgtggttg |
12535256 |
T |
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| Q |
169 |
gtggactatacaacggtggaacagttaaagttacaagaaaggtggaagagttgagtttg |
227 |
Q |
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| T |
12535255 |
gtggactatacaaaggtggaagagttaaggttgcaagaaaagtggaagagctgagtttg |
12535197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 12532897 - 12532769
Alignment:
| Q |
68 |
tttagttacagaacaagaggtgaaagctgctaaag--gagcagttgctgtgctgataaaacgcagtgtcaaacctgatcttgctagttgtcaatccgtga |
165 |
Q |
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| T |
12532897 |
tttagttaaagaacaagaggtgaaaagtgctaaaaaagagcagtagctgtgctgataaaacgcggtgtcaaacctaatcttgctagttatcaatccgtga |
12532798 |
T |
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| Q |
166 |
ttggtggactatacaacggtggaacagtt |
194 |
Q |
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| T |
12532797 |
gtggtggcctgtccaaaggtggaagagtt |
12532769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 432 - 521
Target Start/End: Complemental strand, 12535075 - 12534982
Alignment:
| Q |
432 |
tgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctatat----ctttgcttccaagtgtgtgcactgcaaaataa |
521 |
Q |
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| T |
12535075 |
tgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgcactagaaaataa |
12534982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 12538630 - 12538578
Alignment:
| Q |
112 |
ctgtgctgataaaacgcagtgtcaaacctgatcttgctagttgtcaatccgtg |
164 |
Q |
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| T |
12538630 |
ctgtgcagataaaacgcggtgtcaaacctgatcttgctagttatcaatccgtg |
12538578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 47569320 - 47569427
Alignment:
| Q |
72 |
gttacagaacaagaggtgaaagctgctaaaggagcagttgctgtgctgataaaacgcagtgtcaaacctgatcttgctagttgtcaatccgtgattggtg |
171 |
Q |
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| T |
47569320 |
gttaccgaacaagaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggta |
47569419 |
T |
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| Q |
172 |
gactatac |
179 |
Q |
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| T |
47569420 |
gactatac |
47569427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 384520 - 384373
Alignment:
| Q |
68 |
tttagttacagaacaagaggtgaaagctgctaaaggagcagttgctgtgctgataaaacgcagtgtcaaacctgatcttgctagttgtcaatccgtgatt |
167 |
Q |
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| T |
384520 |
tttagttacagaacaagaggtcaaatctgctaaaagagccgtagctgtgctgattaaacgcggtgtcaaacctaatcttgctgcttgtcagtctgtgatt |
384421 |
T |
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| Q |
168 |
ggtggactatacaacggtggaacagttaaagttacaagaaaggtggaa |
215 |
Q |
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| T |
384420 |
ggtggactgttcaaaggtggaagagttaagattgcaagaaaggtggaa |
384373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 384192 - 384135
Alignment:
| Q |
431 |
atgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctata |
488 |
Q |
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| T |
384192 |
atgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctata |
384135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 36007986 - 36007923
Alignment:
| Q |
204 |
agaaaggtggaagagttgagtttgagattttcctattgttttctgaaaaatcattactgaggtta |
268 |
Q |
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| T |
36007986 |
agaaaggtggaagagttgagtttgagattttccgtttg-tttctggaaaatcattactgaggtta |
36007923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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