View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18069_low_3 (Length: 353)

Name: NF18069_low_3
Description: NF18069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18069_low_3
NF18069_low_3
[»] chr5 (3 HSPs)
chr5 (15-353)||(41900519-41900857)
chr5 (229-353)||(32268442-32268566)
chr5 (15-114)||(32268228-32268327)
[»] chr8 (4 HSPs)
chr8 (17-143)||(27922867-27922993)
chr8 (239-290)||(27923092-27923143)
chr8 (26-68)||(18314971-18315013)
chr8 (26-62)||(14003817-14003853)
[»] chr4 (2 HSPs)
chr4 (20-68)||(1601177-1601225)
chr4 (170-203)||(53761012-53761045)
[»] chr3 (1 HSPs)
chr3 (172-207)||(13469868-13469903)
[»] chr7 (1 HSPs)
chr7 (324-353)||(10615715-10615744)
[»] chr1 (1 HSPs)
chr1 (16-68)||(19467780-19467832)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 41900857 - 41900519
Alignment:
Q  15 tattggaaaatgataaagacctcaatgttggtctctggcggagagcaaaagcaagaccatcaaaggttgtatcaaaacatgttaacaagatggcctcttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41900857 tattggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaagaccatcaaaggttgtatcaaaacatgtcaacaagatggcctcttc 41900758  T
Q  115 aagaaacttacaatttttgaacaactggaaaattaatttgtcaacatgataatgaccagaaagattaaccttacggagtttaaaaagtgcaagctcctct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41900757 aagaaacttacaatttttgaacaactggaaaattaatttgtcaacatgataatgaccagagagattaaccttacggagtttaaaaagtgcaagctcctct 41900658  T
Q  215 agctcatcataattgcattgtgtggggtatctgaggtcgagaacttccaacaaagggaaacagtcagagataagtaaaagatcgctgctgttgatataat 314  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41900657 agctcatcataattgcattgtgtggggtatctgagatcgagaacttccaacaaagggaaacagtcagagataagtaaaagatcgctgctattgatataat 41900558  T
Q  315 gcatttcgtaacaagtgagagaggtcaaagttgtaatct 353  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41900557 gcatttcgtaacaagtgagagaggtcaaagttgtaatct 41900519  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 32268442 - 32268566
Alignment:
Q  229 gcattgtgtggggtatctgaggtcgagaacttccaacaaagggaaacagtcagagataagtaaaagatcgctgctgttgatataatgcatttcgtaacaa 328  Q
    |||||||||||||||  ||||||| || ||||||||||| |||||||| | ||||||||||| |||||||||||| |||||||| ||||||| | |||||    
T  32268442 gcattgtgtggggtaattgaggtctaggacttccaacaaggggaaacaatgagagataagtacaagatcgctgctattgatatattgcattttggaacaa 32268541  T
Q  329 gtgagagaggtcaaagttgtaatct 353  Q
    |||||||||||||||||||||||||    
T  32268542 gtgagagaggtcaaagttgtaatct 32268566  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 32268228 - 32268327
Alignment:
Q  15 tattggaaaatgataaagacctcaatgttggtctctggcggagagcaaaagcaagaccatcaaaggttgtatcaaaacatgttaacaagatggcctcttc 114  Q
    |||||||||| |||| ||||||||||||||||||||  ||||| |||  ||||| |||| |||||||| | |||| |||||  |||| ||||||||||||    
T  32268228 tattggaaaaggatacagacctcaatgttggtctctcacggagggcattagcaataccaacaaaggttatgtcaacacatggcaacatgatggcctcttc 32268327  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 27922867 - 27922993
Alignment:
Q  17 ttggaaaatgataaagacctcaatgttggtctctggcggagagcaaaagcaagaccatcaaaggttgtatcaaaacatgttaacaagatggcctcttcaa 116  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||   |||||  |||||||||||| | ||||||||    |||| ||| |||||||| |    
T  27922867 ttggaaaatgataaagacctcaaggttggtctctcgcgcagagctttagcaattccatcaaaggttatgtcaaaacagtgcaacatgatagcctcttcga 27922966  T
Q  117 gaaacttacaatttttgaacaactgga 143  Q
    ||| ||||||| |||||||||| ||||    
T  27922967 gaaccttacaacttttgaacaaatgga 27922993  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 27923092 - 27923143
Alignment:
Q  239 gggtatctgaggtcgagaacttccaacaaagggaaacagtcagagataagta 290  Q
    ||||| ||||||||||| |||||||||||||||||| | | |||||||||||    
T  27923092 gggtaactgaggtcgaggacttccaacaaagggaaataatgagagataagta 27923143  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 18315013 - 18314971
Alignment:
Q  26 gataaagacctcaatgttggtctctggcggagagcaaaagcaa 68  Q
    |||||||||||||| ||||||||||  ||||||||||||||||    
T  18315013 gataaagacctcaaagttggtctctcacggagagcaaaagcaa 18314971  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 14003817 - 14003853
Alignment:
Q  26 gataaagacctcaatgttggtctctggcggagagcaa 62  Q
    ||||||||  |||||||||||||||||||||||||||    
T  14003817 gataaagaagtcaatgttggtctctggcggagagcaa 14003853  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  20 gaaaatgataaagacctcaatgttggtctctggcggagagcaaaagcaa 68  Q
    ||||| |||||||||||||||||||||||||  ||||||||| ||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 53761045 - 53761012
Alignment:
Q  170 ccagaaagattaaccttacggagtttaaaaagtg 203  Q
    |||||||||||||||||||||||||| |||||||    
T  53761045 ccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 13469903 - 13469868
Alignment:
Q  172 agaaagattaaccttacggagtttaaaaagtgcaag 207  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13469903 agaaagattaaccttgcggagtttaaaaagtgcaag 13469868  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Original strand, 10615715 - 10615744
Alignment:
Q  324 aacaagtgagagaggtcaaagttgtaatct 353  Q
    ||||||||||||||||||||||||||||||    
T  10615715 aacaagtgagagaggtcaaagttgtaatct 10615744  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 19467832 - 19467780
Alignment:
Q  16 attggaaaatgataaagacctcaatgttggtctctggcggagagcaaaagcaa 68  Q
    |||| |||| |||||||||||||||||||||||||  |||| |||| ||||||    
T  19467832 attgcaaaacgataaagacctcaatgttggtctctcacggatagcagaagcaa 19467780  T

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