View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18069_low_4 (Length: 334)
Name: NF18069_low_4
Description: NF18069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18069_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 38275192 - 38275495
Alignment:
| Q |
13 |
cacagacaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaa |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275192 |
cacacacaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaa |
38275291 |
T |
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| Q |
113 |
agcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275292 |
agcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaa |
38275391 |
T |
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| Q |
213 |
ggggggaaaatgcataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggagagcct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275392 |
ggggggaaaatgcataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggagagcct |
38275491 |
T |
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| Q |
313 |
ttgg |
316 |
Q |
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|||| |
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| T |
38275492 |
ttgg |
38275495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
71 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
170 |
Q |
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| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
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| Q |
171 |
ttaccga |
177 |
Q |
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| T |
36870549 |
ttaccga |
36870555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 37962416 - 37962355
Alignment:
| Q |
231 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttag |
292 |
Q |
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| T |
37962416 |
aattaaaaggataaggtaaaactcaccagctagcaattagagttatcaatccaacaatttag |
37962355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 20455 - 20392
Alignment:
| Q |
231 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
294 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
20455 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
20392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 16430473 - 16430410
Alignment:
| Q |
231 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
294 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
16430473 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
16430410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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