View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1806_high_10 (Length: 262)

Name: NF1806_high_10
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1806_high_10
NF1806_high_10
[»] chr2 (5 HSPs)
chr2 (36-255)||(29894321-29894540)
chr2 (36-255)||(24543105-24543324)
chr2 (36-255)||(36364932-36365151)
chr2 (101-255)||(40287017-40287171)
chr2 (124-199)||(12555415-12555490)
[»] chr1 (16 HSPs)
chr1 (36-255)||(11351597-11351816)
chr1 (40-255)||(21515101-21515314)
chr1 (36-255)||(6784170-6784389)
chr1 (36-209)||(20639482-20639655)
chr1 (38-255)||(32988886-32989105)
chr1 (145-248)||(2536489-2536592)
chr1 (122-255)||(44839857-44839990)
chr1 (98-226)||(51080701-51080829)
chr1 (145-236)||(39648376-39648467)
chr1 (193-255)||(52823473-52823535)
chr1 (149-201)||(3601275-3601327)
chr1 (149-209)||(2114361-2114421)
chr1 (155-209)||(26418791-26418845)
chr1 (155-209)||(32108435-32108489)
chr1 (149-186)||(12539121-12539158)
chr1 (149-186)||(17321880-17321917)
[»] chr4 (10 HSPs)
chr4 (36-255)||(43989258-43989476)
chr4 (74-255)||(19315890-19316071)
chr4 (161-255)||(43813171-43813265)
chr4 (145-250)||(1394126-1394232)
chr4 (149-185)||(9633063-9633099)
chr4 (155-209)||(13200849-13200903)
chr4 (155-209)||(47783000-47783054)
chr4 (149-186)||(35096913-35096950)
chr4 (149-185)||(1479301-1479337)
chr4 (203-255)||(36469322-36469374)
[»] chr3 (17 HSPs)
chr3 (36-255)||(51976652-51976871)
chr3 (36-255)||(36684797-36685016)
chr3 (36-255)||(8705604-8705823)
chr3 (36-255)||(9057491-9057710)
chr3 (36-255)||(45736358-45736577)
chr3 (66-252)||(4978417-4978603)
chr3 (71-207)||(49758966-49759102)
chr3 (145-255)||(47165345-47165455)
chr3 (101-225)||(38998864-38998988)
chr3 (71-182)||(26390800-26390911)
chr3 (101-255)||(37796562-37796716)
chr3 (144-200)||(20916409-20916465)
chr3 (144-200)||(20925371-20925427)
chr3 (75-209)||(5340494-5340628)
chr3 (155-209)||(32073610-32073664)
chr3 (149-238)||(29237227-29237316)
chr3 (149-201)||(10346537-10346589)
[»] chr8 (5 HSPs)
chr8 (36-255)||(18481125-18481344)
chr8 (122-255)||(26440784-26440917)
chr8 (78-225)||(32536156-32536303)
chr8 (145-255)||(7251107-7251217)
chr8 (145-181)||(11911438-11911474)
[»] chr5 (11 HSPs)
chr5 (59-255)||(41197356-41197552)
chr5 (36-255)||(36779403-36779619)
chr5 (125-255)||(30376427-30376557)
chr5 (98-254)||(34905529-34905685)
chr5 (203-255)||(12378608-12378660)
chr5 (145-255)||(12714847-12714957)
chr5 (145-255)||(12776078-12776188)
chr5 (194-255)||(39714874-39714935)
chr5 (145-201)||(34522-34578)
chr5 (109-209)||(14856968-14857068)
chr5 (151-246)||(29985435-29985530)
[»] chr6 (6 HSPs)
chr6 (36-255)||(942585-942804)
chr6 (145-255)||(4513073-4513183)
chr6 (149-235)||(19047092-19047178)
chr6 (145-255)||(12125817-12125927)
chr6 (155-209)||(15950809-15950863)
chr6 (149-253)||(13757503-13757607)
[»] chr7 (9 HSPs)
chr7 (39-255)||(23820418-23820634)
chr7 (36-255)||(24808771-24808970)
chr7 (122-255)||(21118373-21118505)
chr7 (145-257)||(40901803-40901915)
chr7 (149-201)||(12980735-12980787)
chr7 (155-209)||(10325112-10325166)
chr7 (155-209)||(29526837-29526891)
chr7 (153-209)||(20492489-20492545)
chr7 (145-185)||(31957063-31957103)
[»] scaffold0041 (1 HSPs)
scaffold0041 (145-257)||(48103-48215)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 29894540 - 29894321
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29894540 ttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcaggcttgtagacagtt 29894441  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  29894440 gttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagc 29894341  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  29894340 tcccacgtttatgatgatgt 29894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 24543105 - 24543324
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24543105 ttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagatagtt 24543204  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  24543205 gttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagc 24543304  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  24543305 tcccacgtttatgatgatgt 24543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 36364932 - 36365151
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  36364932 ttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcatacttgtaggcagtt 36365031  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  36365032 gttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccccatctcatgctagc 36365131  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||| ||||||    
T  36365132 tcccacgtttatggtgatgt 36365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 255
Target Start/End: Complemental strand, 40287171 - 40287017
Alignment:
Q  101 gaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctc 200  Q
    ||||| ||||||||||||   || ||||||||||||||  |   ||||||||| ||||| |||||| |||| |||| ||||||||| |||| |||| |||    
T  40287171 gaacttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactc 40287072  T
Q  201 atgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    |||||||||  ||||||||||||||| || ||||| ||  | |||||||||||||    
T  40287071 atgaattagcgagggtagccccatctgatcctagccccaccatttatgatgatgt 40287017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 12555490 - 12555415
Alignment:
Q  124 ttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgct 199  Q
    |||||||||||||||  ||   |||||||||||||| |||||| ||||||||||||||||||  |||| |||||||    
T  12555490 ttgtagacagttgttacataacagttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgct 12555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 11351816 - 11351597
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351816 ttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 11351717  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  11351716 gttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagc 11351617  T
Q  236 tcccacgtttatgatgatgt 255  Q
    | ||||||||||||||||||    
T  11351616 ttccacgtttatgatgatgt 11351597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 255
Target Start/End: Original strand, 21515101 - 21515314
Alignment:
Q  40 ttttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttc 139  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  21515101 ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc 21515200  T
Q  140 gattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctccc 239  Q
    || |||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  21515201 gaatgtaattttcagaact--catgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctccc 21515298  T
Q  240 acgtttatgatgatgt 255  Q
    ||||||||||||||||    
T  21515299 acgtttatgatgatgt 21515314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 6784170 - 6784389
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784170 ttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 6784269  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||  ||||||||| ||||||||| |||||    
T  6784270 gttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctcatactagc 6784369  T
Q  236 tcccacgtttatgatgatgt 255  Q
    | ||||||||||||| ||||    
T  6784370 ttccacgtttatgataatgt 6784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 20639482 - 20639655
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||||||||||||   |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  20639482 ttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcaggcttgtaggcagtt 20639581  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  20639582 gttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattag 20639655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 32989105 - 32988886
Alignment:
Q  38 gattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgt 137  Q
    |||||||||| ||||   |||| |||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  32989105 gattttgtttcggattccaagtatgttgttgaacgttttaatttaaacttacgtgatagcagtgaactaggttgtattattcagacttgtaggcagttgt 32989006  T
Q  138 tcgattgtagttttcagaactcccatgtcgagt----tcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgcta 233  Q
    |||||||||  ||||||||||| ||||||||||    |  |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  32989005 tcgattgtaactttcagaactctcatgtcgagttatatatataggaggcaagccaat--tttcgctcatgaattagttagggtagccccatctcatgcta 32988908  T
Q  234 gctcccacgtttatgatgatgt 255  Q
    ||| || |||||||||||||||    
T  32988907 gcttccgcgtttatgatgatgt 32988886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 2536592 - 2536489
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2536592 tagttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcatgctagctcccatgtt 2536493  T
Q  245 tatg 248  Q
    ||||    
T  2536492 tatg 2536489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 44839990 - 44839857
Alignment:
Q  122 gcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccc 221  Q
    ||||||||||| ||||| ||   ||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||||| |||| |||||||||||    
T  44839990 gcttgtagacaattgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccc 44839891  T
Q  222 catctcatgctagctcccacgtttatgatgatgt 255  Q
    ||||| ||||||||||| ||||||||||| ||||    
T  44839890 catctaatgctagctcctacgtttatgataatgt 44839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 51080829 - 51080701
Alignment:
Q  98 agtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcg 197  Q
    |||||||| ||||||||||||   || ||||||||||||||  |   ||||||||| ||||| ||||||||||| |||||||||||| | |||| |||||    
T  51080829 agtgaacttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcg 51080730  T
Q  198 ctcatgaattagttagggtagccccatct 226  Q
    ||||||||||||  |||||||||||||||    
T  51080729 ctcatgaattagcgagggtagccccatct 51080701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 39648467 - 39648376
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagct 236  Q
    |||| |||||||||| | ||||||||| ||||| || ||||| |||  ||||||||||||||||| |  |||||||||||||||||||||||    
T  39648467 tagtcttcagaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcaggtagccccatctcatgctagct 39648376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 52823535 - 52823473
Alignment:
Q  193 ggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |||| | ||||| ||||||||    
T  52823535 ggtcgctcatgaattagttagggtagctccatctcatactaactcctatgtttacgatgatgt 52823473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 3601327 - 3601275
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctca 201  Q
    ||||||||||| |||||||||||||||||||||||||| |||| ||| |||||    
T  3601327 tttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctca 3601275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 2114361 - 2114421
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||||||||| |||||||||||||| |||| | |||| |||| ||||||||| |||||||    
T  2114361 tttcagaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattag 2114421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 26418845 - 26418791
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| | |||||||||||| |||| ||| |||||||||||||    
T  26418845 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattag 26418791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 32108435 - 32108489
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| | |||||||||||| |||| ||| |||||||||||||    
T  32108435 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattag 32108489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 12539121 - 12539158
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagc 186  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  12539121 tttcagaactctcatgtcgagttcaacaggaggcaagc 12539158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 17321880 - 17321917
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagc 186  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  17321880 tttcagaactctcatgtcgagttcaacaggaggcaagc 17321917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 43989476 - 43989258
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  43989476 ttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgcagacaatt 43989377  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43989376 gttcgattgtattttt-agaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccccatctcatgctagc 43989278  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  43989277 tcccacgtttatgatgatgt 43989258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 19316071 - 19315890
Alignment:
Q  74 tttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttca 173  Q
    ||||| |||||  ||| |||||| ||||| |||||||| ||||| || ||||||||| ||||||| | |   |||||||||||||| |||||||||||||    
T  19316071 tttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcatgtcgagttca 19315972  T
Q  174 ataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||  |||| |||||||||||    |||||||||| || ||| ||||||||||| ||||||| ||||    
T  19315971 ataggaggcaagccaatggagtcgttcatgaattagcacaggtagccccaccttatggtagctcccacgcttatgattatgt 19315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 43813265 - 43813171
Alignment:
Q  161 catgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    ||||||||||||||||| || |||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  43813265 catgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgt 43813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 1394126 - 1394232
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtag-ccccatctcatgctagctcccacgt 243  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||     |||| |||||||| |||||||||||||| |    
T  1394126 tagttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagcacaagtagtccccatctaatgctagctcccacat 1394225  T
Q  244 ttatgat 250  Q
     ||||||    
T  1394226 ctatgat 1394232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 9633063 - 9633099
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaag 185  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9633063 tttcagaactctcatgtcgagttcaataggaggcaag 9633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 13200849 - 13200903
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||||| |||||||||||| |||| ||| |||||||| ||||    
T  13200849 aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttag 13200903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 47783000 - 47783054
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| | |||||||||||| |||| ||| |||||||||||||    
T  47783000 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattag 47783054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 35096913 - 35096950
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagc 186  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  35096913 tttcagaactctcatgtcgagttcaatagaaggcaagc 35096950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 1479337 - 1479301
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaag 185  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  1479337 tttcagaactctcatatcgagttcaataggaggcaag 1479301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 36469322 - 36469374
Alignment:
Q  203 gaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    |||||| | |||||| |||||||||| ||||||||| || |||||||||||||    
T  36469322 gaattaataagggtaaccccatctcaagctagctcctacatttatgatgatgt 36469374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 51976652 - 51976871
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51976652 ttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagaaagtt 51976751  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  51976752 gtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctccatctcatgctagc 51976851  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  51976852 tcccacgtttatgatgatgt 51976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 36684797 - 36685016
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36684797 ttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggcttgtagacagtt 36684896  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  36684897 gttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccccatctcatgctagc 36684996  T
Q  236 tcccacgtttatgatgatgt 255  Q
    || |||||||||||||||||    
T  36684997 tctcacgtttatgatgatgt 36685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 8705604 - 8705823
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||||||||||||   |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  8705604 ttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggcttgtaggcagtt 8705703  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  8705704 gtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagc 8705803  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  8705804 tcccacgtttatgatgatgt 8705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 9057491 - 9057710
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||||||||||||   |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  9057491 ttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggcttgtaggcagtt 9057590  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  9057591 gtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagc 9057690  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  9057691 tcccacgtttatgatgatgt 9057710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 45736358 - 45736577
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||||||||||||   |||| ||||||| |||||||||||| ||| |||| ||||||||||||| |||||||||||||| ||| |||||| || ||    
T  45736358 ttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaatt 45736457  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||  |||||| |  ||||| | |||||| |||||||||| |||||||||||| |    
T  45736458 gttcgattgtaattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgctaac 45736557  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  45736558 tcccacgtttatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 4978603 - 4978417
Alignment:
Q  66 ttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgt 165  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||| || ||||||| || || |||||||||||| |||||    
T  4978603 ttgaacgttttaattcaaacctaggtgataatagtaaactaggttgtattattctggcttgtaggcacttgttcggttataattttcagaactctcatgt 4978504  T
Q  166 cgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatga 252  Q
    |||||| |||| ||| |||||||||| ||||| ||||||||||| ||| |||||| |||||||||||| ||| | | ||||||||||    
T  4978503 cgagtttaatatgagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctcatgctaactcgcgcatttatgatga 4978417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 49759102 - 49758966
Alignment:
Q  71 cgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagt 170  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||||| ||||||| | |||| | | ||||| ||||||||||||  |||||| ||    
T  49759102 cgttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttatgtcgggt 49759003  T
Q  171 tcaataggaggcaagccaatgcggtcgctcatgaatt 207  Q
    |||||||||||||||| |||| | |||||||||||||    
T  49759002 tcaataggaggcaagctaatgggatcgctcatgaatt 49758966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 47165455 - 47165345
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    |||||||||||  || || |||||||||||||||||||||| ||||| |||||||| ||||||||  | || ||||||||||||||||||||||||||||    
T  47165455 tagttttcagagttctcacgtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattaggaaaggcagccccatctcatgctagctcccacgtt 47165356  T
Q  245 tatgatgatgt 255  Q
    || | ||||||    
T  47165355 tacggtgatgt 47165345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 38998864 - 38998988
Alignment:
Q  101 gaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctc 200  Q
    ||||| ||||||||||||  ||| ||||||||||||||  |   ||||||||| ||||| ||||||||||| |||||||||||||| |||| ||||||||    
T  38998864 gaacttggttgtattattacggcctgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T
Q  201 atgaattagttagggtagccccatc 225  Q
    | |||||||  ||||||||||||||    
T  38998964 acgaattagcgagggtagccccatc 38998988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 26390911 - 26390800
Alignment:
Q  71 cgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagt 170  Q
    |||||||| | ||||||||  ||||| |||||||||||||| ||||| || ||||||||||||||||| | |||||||||| | ||||| | ||||||||    
T  26390911 cgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagcttgtagacagttgtttgcttgtagtttttataactctcgtgtcgagt 26390812  T
Q  171 tcaataggaggc 182  Q
    ||||||||||||    
T  26390811 tcaataggaggc 26390800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 255
Target Start/End: Original strand, 37796562 - 37796716
Alignment:
Q  101 gaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctc 200  Q
    ||||| ||||||||||||  ||| ||||||||||||||  |   ||||||||| ||| | ||||||||||| |||||||||||||| |||| ||||||||    
T  37796562 gaacttggttgtattattacggcctgtagacagttgtttcaggatagttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctc 37796661  T
Q  201 atgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    |  ||||||  ||||||||||||||| || ||||| ||  | |||||||||||||    
T  37796662 acaaattagcgagggtagccccatctgatcctagccccaccatttatgatgatgt 37796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 20916409 - 20916465
Alignment:
Q  144 gtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctc 200  Q
    ||||||||||||||||  |||| |||||||||||||||||||| |||| ||||||||    
T  20916409 gtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctc 20916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 20925371 - 20925427
Alignment:
Q  144 gtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctc 200  Q
    ||||||||||||||||  |||| |||||||||||||||||||| |||| ||||||||    
T  20925371 gtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctc 20925427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 5340628 - 5340494
Alignment:
Q  75 ttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaa 174  Q
    |||| |||||| ||| |||||  |||||||||||||||||||| || |||| |||||| ||||| | |  || |||| | || | |||||| ||||||||    
T  5340628 ttaactcaaacatagatgataatagtgaactaggttgtattatacatgcttttagacaattgtttgctaataatttttaaaagtgccatgttgagttcaa 5340529  T
Q  175 taggaggcaagccaatgcggtcgctcatgaattag 209  Q
    |||| ||||||  |||   ||||||||||||||||    
T  5340528 tagggggcaaggtaatagagtcgctcatgaattag 5340494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 32073664 - 32073610
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| | |||||||||||| |||| ||| |||||||||||||    
T  32073664 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattag 32073610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 29237227 - 29237316
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcc 238  Q
    ||||| ||||| |||||||||| |||||| |||||||| |||| |||| ||   || |||| |  ||||||||||| |||||||||||||    
T  29237227 tttcaaaactcacatgtcgagtgcaatagaaggcaagctaatgaggtcacttgcgagttagctcaggtagccccatgtcatgctagctcc 29237316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 10346589 - 10346537
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctca 201  Q
    ||||||||||| ||||| |||||||| ||||||||||| |||  |||||||||    
T  10346589 tttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctca 10346537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 18481125 - 18481344
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18481125 ttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagatagtt 18481224  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||| |||| ||||| |||||| |||||||||||||||||||||||||    
T  18481225 gttcgattgtaattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccccatctcatgctagc 18481324  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||||||||||||    
T  18481325 tcccacgtttatgatgatgt 18481344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 26440784 - 26440917
Alignment:
Q  122 gcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccc 221  Q
    ||||||||||||||||| ||   ||||||| ||||||| |||||||||||||||||||||||||| |||| ||| |||||||| |||| |||||||||||    
T  26440784 gcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccc 26440883  T
Q  222 catctcatgctagctcccacgtttatgatgatgt 255  Q
    ||||| |||||||||| |||| ||||||| ||||    
T  26440884 catctaatgctagctctcacgattatgataatgt 26440917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 32536303 - 32536156
Alignment:
Q  78 attcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaatag 177  Q
    ||||||||||||  ||||  ||||||||||||||||||||||||||||||| ||| ||| | | ||||| ||||  ||||||  |||||||||||||| |    
T  32536303 attcaaacctagacgataatagtgaactaggttgtattattcaggcttgtaaacaattgattgcttgtaattttatgaactcttatgtcgagttcaattg 32536204  T
Q  178 gaggcaagccaatgcggtcgctcatgaattagttagggtagccccatc 225  Q
     |  ||||  |||| |||||||| |||||||| |||||||||||||||    
T  32536203 aaaacaagttaatggggtcgctcgtgaattagctagggtagccccatc 32536156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 7251107 - 7251217
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||| | || |||||| ||||  || ||||||||||||||||||||||| ||| | |    
T  7251107 tagttttcagaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctcatgctagcttccatgat 7251206  T
Q  245 tatgatgatgt 255  Q
    |||||| ||||    
T  7251207 tatgataatgt 7251217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 11911474 - 11911438
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggagg 181  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  11911474 tagttttcaaaactctcatgtcgagttcaataggagg 11911438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 59 - 255
Target Start/End: Complemental strand, 41197552 - 41197356
Alignment:
Q  59 tctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaact 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||    
T  41197552 tctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaact 41197453  T
Q  159 cccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    |  |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41197452 cttatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 41197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 36779619 - 36779403
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||| ||||||||   |||||| ||||||||||||||||||||||||||  ||| || ||||||||||||||||||||| |||||||||| |||||    
T  36779619 ttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggcagtt 36779520  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||| | |||||   |||||||||| |||||||||| |||||||||||||||||||   ||| |||||| ||||| |||||||| ||||||| ||| ||||    
T  36779519 gtttggttgta--attcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtagtcccatct-atgttagc 36779423  T
Q  236 tcccacgtttatgatgatgt 255  Q
    |||||||| |||||||||||    
T  36779422 tcccacgtctatgatgatgt 36779403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 30376557 - 30376427
Alignment:
Q  125 tgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccat 224  Q
    ||||| ||||||||||||| || |||||| |||||  |||||||||||||||||||||||||||||  ||||||||||||||||| || ||||||| |||    
T  30376557 tgtaggcagttgttcgattataattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcat 30376458  T
Q  225 ctcatgctagctcccacgtttatgatgatgt 255  Q
    |||||||||||||| ||||||||||||||||    
T  30376457 ctcatgctagctccaacgtttatgatgatgt 30376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 34905529 - 34905685
Alignment:
Q  98 agtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcg 197  Q
    ||||| ||||||||| |||| || ||||||||||||||||| | |  |||||||||||||||   ||| |||||||||||||| ||| |||||| |||||    
T  34905529 agtgagctaggttgtgttatacatgcttgtagacagttgtttgttaatagttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcg 34905628  T
Q  198 ctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatg 254  Q
    ||||||||||||     ||||||| ||||||||||| |||||| ||||| |||||||    
T  34905629 ctcatgaattagcccaagtagcccgatctcatgctaactcccaagtttacgatgatg 34905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 12378660 - 12378608
Alignment:
Q  203 gaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12378660 gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 12378608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 12714957 - 12714847
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    ||||||||||||||| ||||| | |||||| |||| |||| | |||| ||||| |||| ||||||    |||| ||||||| ||||||||||| || |||    
T  12714957 tagttttcagaactctcatgttgggttcaaaaggaagcaacctaatggggtcgttcataaattagcagaggtaaccccatcacatgctagctctcatgtt 12714858  T
Q  245 tatgatgatgt 255  Q
    |||||||||||    
T  12714857 tatgatgatgt 12714847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 12776188 - 12776078
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    ||||||||||||||| ||||| | |||||| |||| |||| | |||| ||||| |||| ||||||    |||| ||||||| ||||||||||| || |||    
T  12776188 tagttttcagaactctcatgttgggttcaaaaggaagcaacctaatggggtcgttcataaattagcagaggtaaccccatcacatgctagctctcatgtt 12776089  T
Q  245 tatgatgatgt 255  Q
    |||||||||||    
T  12776088 tatgatgatgt 12776078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 39714874 - 39714935
Alignment:
Q  194 gtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 255  Q
    |||||||||||||||||||| ||||||||| || ||  |||||| |||||||||||||||||    
T  39714874 gtcgctcatgaattagttagtgtagccccaccttatattagctctcacgtttatgatgatgt 39714935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 34522 - 34578
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctca 201  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||  |||||||||    
T  34522 tagttttcagaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 14857068 - 14856968
Alignment:
Q  109 ttgtattattcaggcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaatta 208  Q
    |||||||||| | |||| ||||||||||||| ||   || ||||| ||||| ||||||||||| |||| ||||||| | |||| | ||||||||||||||    
T  14857068 ttgtattattaatgcttctagacagttgttccatgaaagctttcaaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatta 14856969  T
Q  209 g 209  Q
    |    
T  14856968 g 14856968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 29985435 - 29985530
Alignment:
Q  151 tcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgttta 246  Q
    ||||||||| ||||||||||||||||| || ||||| |||| ||||| ||| || |||| |  |||||||| |  ||||| |||||||||| ||||    
T  29985435 tcagaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcaggtagccctaggtcatgttagctcccacattta 29985530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 942585 - 942804
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    |||||||||||||||||   |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  942585 ttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcaggcttgtaggcagtt 942684  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||| |||||||| ||||  | ||||||||||||||| |    
T  942685 gttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccccatctcatgctatc 942784  T
Q  236 tcccacgtttatgatgatgt 255  Q
    ||||||||||| ||||||||    
T  942785 tcccacgtttacgatgatgt 942804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 4513073 - 4513183
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||| |||    
T  4513073 tagttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctcccatgtt 4513172  T
Q  245 tatgatgatgt 255  Q
    |||||| ||||    
T  4513173 tatgataatgt 4513183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 19047092 - 19047178
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||| ||||||||| |||||||  |||||||||| |||| || |||||    
T  19047092 tttcaaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagcgagggtagccctatctgatcctagc 19047178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 12125817 - 12125927
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    |||||||||||| || |||||  | ||||||| ||||||||| ||||  || |||||||||||||     |||||| ||||||||||||||| ||| ||     
T  12125817 tagttttcagaattctcatgttcaattcaatatgaggcaagctaatgaagtggctcatgaattagcacatgtagcctcatctcatgctagcttccatgtc 12125916  T
Q  245 tatgatgatgt 255  Q
    |||||||||||    
T  12125917 tatgatgatgt 12125927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 15950809 - 15950863
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| | |||||||||||| |||| ||| |||||||||||||    
T  15950809 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattag 15950863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 13757607 - 13757503
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatg 248  Q
    ||||| ||||| ||||| ||||| |||| || |||| | |||| ||||||||| ||||||| |||| |||| |||| | || |||||||| |  ||||||    
T  13757607 tttcaaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagctaggatagctccatataatcctagctccaatttttatg 13757508  T
Q  249 atgat 253  Q
    |||||    
T  13757507 atgat 13757503  T

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Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 23820418 - 23820634
Alignment:
Q  39 attttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgtt 138  Q
    ||||||||||||||   ||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||    
T  23820418 attttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggtttgtaggcagttgtt 23820517  T
Q  139 cgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcc 238  Q
     ||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||||    
T  23820518 tgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatccatctcatgctagctcc 23820617  T
Q  239 cacgtttatgatgatgt 255  Q
    ||| |||||||||||||    
T  23820618 cacatttatgatgatgt 23820634  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 24808970 - 24808771
Alignment:
Q  36 ttgattttgttttggatggaaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagtt 135  Q
    ||||||||||||| |||   |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  24808970 ttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggcttgtaggcagtt 24808871  T
Q  136 gttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagc 235  Q
    ||| | ||||         |||        | |||||||||||||||||||||||| || | |||||||||||| |||| |||||||||||||||||||     
T  24808870 gtttggttgt---------aac--------ctagttcaataggaggcaagccaatggggccactcatgaattagctaggatagccccatctcatgctag- 24808789  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 21118373 - 21118505
Alignment:
Q  122 gcttgtagacagttgttcgattgtagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccc 221  Q
    ||||||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||  |||| ||||||||| |    
T  21118373 gcttgtagacagttgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcac 21118471  T
Q  222 catctcatgctagctcccacgtttatgatgatgt 255  Q
    |||||  |||||||||| ||||||||||| ||||    
T  21118472 catctattgctagctccaacgtttatgataatgt 21118505  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 40901915 - 40901803
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    |||||| |||||||| ||||||||||| |||||||||||| | |||  ||||||||||||||||     |||||| ||||||||||||||||||||  |     
T  40901915 tagtttgcagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatc 40901816  T
Q  245 tatgatgatgtcc 257  Q
    |||||||||||||    
T  40901815 tatgatgatgtcc 40901803  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 12980735 - 12980787
Alignment:
Q  149 tttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctca 201  Q
    ||||||||||| |||||||||||||| ||||||||| | |||| |||||||||    
T  12980735 tttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctca 12980787  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 10325166 - 10325112
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| |||||||||||| | |||| |||||||||||| ||||    
T  10325166 aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttag 10325112  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 29526837 - 29526891
Alignment:
Q  155 aactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||| ||||||||||| | |||||||||||| |||| ||| |||||||||||||    
T  29526837 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattag 29526891  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 20492489 - 20492545
Alignment:
Q  153 agaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattag 209  Q
    ||||||| ||| ||||||| |||||||||||||| |||  ||||||||| |||||||    
T  20492489 agaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattag 20492545  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 31957103 - 31957063
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaag 185  Q
    ||||||||||||||  |||||||| ||||||||||||||||    
T  31957103 tagttttcagaactatcatgtcgaattcaataggaggcaag 31957063  T

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Target: scaffold0041 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 48103 - 48215
Alignment:
Q  145 tagttttcagaactcccatgtcgagttcaataggaggcaagccaatgcggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtt 244  Q
    |||||| |||||||| ||||||||||| |||||||||||| | |||  ||||||||||||||||     |||||| ||||||||||||||||||||  |     
T  48103 tagtttgcagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatc 48202  T
Q  245 tatgatgatgtcc 257  Q
    |||||||||||||    
T  48203 tatgatgatgtcc 48215  T

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