View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1806_high_4 (Length: 371)
Name: NF1806_high_4
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1806_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 35378695 - 35378355
Alignment:
| Q |
16 |
tatatcatcttggaatctaaggaaaatgtgacaaatttgctgaaacaaggaacttgagcaattactttgttacttgatttggcgattgatttaaacttgg |
115 |
Q |
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| T |
35378695 |
tatatcatcttggaatctaaggaaaatgtgacacatttgctgaaacaaggaacttgagcaattactttgttacttgatttggcgattgatttaaacttgg |
35378596 |
T |
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| Q |
116 |
aagatggtagaagaatcaatatgacatttatgaatgcggtaaaatgttgtagacttgtagtgagtggtctttcaattnnnnnnnnnnnnnnnnnnnnnng |
215 |
Q |
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| T |
35378595 |
aagatggtagaagaatcaatatgacatttatgaatgcggtaaaatgttgtagacttgtagtgagtggtctttcaatt--tatatatatgtatatatatag |
35378498 |
T |
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| Q |
216 |
acattacattttccaaactatcacttactcaccataacatatagcacacaagtttcacttcacttattcatacttagctatgacaagttctttagtgttt |
315 |
Q |
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| T |
35378497 |
acattacattttccaaactatcacttactcaccataacatatagcacacaagtttcacttcacttattcatacttagctatgacaagttctttagtgttt |
35378398 |
T |
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| Q |
316 |
agttttagttgtttaatgttgataacaaatttgtttgtggcct |
358 |
Q |
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| T |
35378397 |
agttttagttgtttaatgttgataacaaatttgtttgtggcct |
35378355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 35359658 - 35359581
Alignment:
| Q |
73 |
gcaattactttgttacttgatttggcgattgatttaaacttggaagatggtagaagaatcaatatgacatttatgaatg |
151 |
Q |
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| T |
35359658 |
gcaattattttgttacttgattcggc-attgctttaaacttggaaggtggtagaaaattcaagaaaacatttatgaatg |
35359581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 28849635 - 28849773
Alignment:
| Q |
216 |
acattacattttccaaactatcacttactcaccataacatatagcac-acaagtttcacttcacttat--tcatacttagctatgacaagttctttagtg |
312 |
Q |
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|||| |||||||| ||||||||| |||||||||| |||||||||||| | |||||||| ||||||||| || |||||||| ||||| |||||| |||| |
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| T |
28849635 |
acataacattttc-aaactatcagttactcaccacaacatatagcacgaaaagtttcagttcacttattctcgtacttagccatgactagttctaaagtg |
28849733 |
T |
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| Q |
313 |
tttagttttagttgtttaatgttgataacaaatttgtttgtgg |
355 |
Q |
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| T |
28849734 |
tttagat---gttgtttaataatgataacaaatttgtttgtgg |
28849773 |
T |
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