View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1806_high_6 (Length: 285)
Name: NF1806_high_6
Description: NF1806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1806_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 32849393 - 32849220
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32849393 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
32849294 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttct |
268 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
32849293 |
gagctcattcttccctggtttagattcaattatctgctcaacttgcttcaagaatgtcctatgcttcaagttct |
32849220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 269
Target Start/End: Original strand, 17478275 - 17478447
Alignment:
| Q |
96 |
ttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctag |
195 |
Q |
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|||||||||||||| || ||| ||| || |||||||||||||||||||| ||||||||| |||||| |||||||||||||| | ||||| | || |||| |
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| T |
17478275 |
ttttgtactaattagtagttggtgt-cttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcactatttgatacgtctag |
17478373 |
T |
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| Q |
196 |
agctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctt |
269 |
Q |
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| T |
17478374 |
agctcattcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtccgatgctgcaagttctt |
17478447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 4441971 - 4442143
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
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|||||||||||||| ||||||||| | | | || ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| ||| || |
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| T |
4441971 |
gttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcattta |
4442069 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttct |
268 |
Q |
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|||||||||||||||||||||| | ||||| | |||| |||||||||| |||||||| |||| |||||||| |
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| T |
4442070 |
gagctcattcttccctggtttaactccaattatctgctttccttgcttcaaaaatgtcctgtgctacaagttct |
4442143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 4427437 - 4427265
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
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|||||||||||||||||| ||||||| | || |||| |||||||||||| || |||||||||||| ||||||||||| || || ||||| |||||||| |
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| T |
4427437 |
gttttgtactaattactatttgatgtcat-gttcaaatagtggctgcttggagagccccatgatctaaattttcaagaactttgctatttgtttcgccta |
4427339 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttct |
268 |
Q |
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|| |||| |||| ||| | |||||||| | || |||||||||||| | |||||||||||||||||||| |
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| T |
4427338 |
gaactcactctttgtcggtgcaacatcaattctgtactgaacttgcttcaaaagtgtcctatgcttcaagttct |
4427265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 269
Target Start/End: Complemental strand, 8382741 - 8382602
Alignment:
| Q |
130 |
aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaattcttt |
229 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||| ||| |||| |||| ||||||||||||||| | ||||||| | |
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| T |
8382741 |
aacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaatttgcttcatttagatctcactcttccctggtttagctccaattctct |
8382642 |
T |
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| Q |
230 |
gctcaacttgcttcaagaatgtcctatgcttcaagttctt |
269 |
Q |
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|||| ||||||||| |||||||||| |||| ||||||| |
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| T |
8382641 |
cctcagcttgcttcacaaatgtcctattcttcgagttctt |
8382602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 269
Target Start/End: Complemental strand, 8366738 - 8366599
Alignment:
| Q |
130 |
aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaattcttt |
229 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||| ||| || || || ||| |||| ||||||||||||||||| | ||||||| | |
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| T |
8366738 |
aacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttcatttagatatcattcttccctggtttgactccaattctct |
8366639 |
T |
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| Q |
230 |
gctcaacttgcttcaagaatgtcctatgcttcaagttctt |
269 |
Q |
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|||| ||||||||| |||||||||| ||||| |||||| |
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| T |
8366638 |
tctcagcttgcttcacaaatgtcctattcttcaggttctt |
8366599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 8341327 - 8341447
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
| |
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|||||||||||||||||||||||| | | |||||||||||||||||| | |||||||||||| | | |||||||||||||| ||||| ||||||| |
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| T |
8341327 |
gttttgtactaattactacttgatatcgt-gtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgcctt |
8341425 |
T |
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| Q |
195 |
gagctcattcttccctggttta |
216 |
Q |
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|||||| ||||| ||||||||| |
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| T |
8341426 |
gagctcgttctttcctggttta |
8341447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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